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  "Title": "Extraction of Differential Gene Expression",
  "Date": "2015-04-15",
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  "Author": "John D. Storey, Jeffrey T. Leek and Andrew J. Bass",
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      "fields": [],
      "table": false,
      "tojson": true
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    },
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        "apply_sva,deSet-method"
      ]
    },
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      "topics": [
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        "betaCoef,deFit-method"
      ]
    },
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      "page": "build_models",
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      ]
    },
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      "topics": [
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      ]
    },
    {
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      "title": "The differential expression class for the model fits",
      "topics": [
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      ]
    },
    {
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      "topics": [
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        "deSet,ExpressionSet-method"
      ]
    },
    {
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      "topics": [
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      ]
    },
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      "title": "Extraction of Differential Gene Expression",
      "topics": [
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        "edge"
      ]
    },
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      "topics": [
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      ]
    },
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      "topics": [
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        "fit_models,deSet-method"
      ]
    },
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      "title": "Fitted data from the full model",
      "topics": [
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        "fitFull,deFit-method"
      ]
    },
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      "topics": [
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        "fitNull,deFit-method"
      ]
    },
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      "title": "Matrix representation of full model",
      "topics": [
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        "fullMatrix,deSet-method",
        "fullMatrix<-",
        "fullMatrix<-,deSet-method"
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    },
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      "topics": [
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        "fullModel,deSet-method",
        "fullModel<-",
        "fullModel<-,deSet-method"
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    },
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      "title": "Gene expression dataset from Idaghdour et al. (2008)",
      "topics": [
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    },
    {
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        "individual,deSet-method",
        "individual<-",
        "individual<-,deSet-method"
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        "lrt,deSet,missing-method"
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        "nullMatrix,deSet-method",
        "nullMatrix<-",
        "nullMatrix<-,deSet-method"
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        "nullModel,deSet-method",
        "nullModel<-",
        "nullModel<-,deSet-method"
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        "odp,deSet,deFit-method",
        "odp,deSet,missing-method"
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        "qvalueObj<-",
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    },
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    },
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