{
  "_id": "6a1ad2651d7bb097a09e2ea2",
  "Package": "ecolitk",
  "Version": "1.85.0",
  "Date": "2010-04",
  "Title": "Meta-data and tools for E. coli",
  "Author": "Laurent Gautier",
  "Maintainer": "Laurent Gautier <lgautier@gmail.com>",
  "biocViews": "Annotation, Visualization",
  "Description": "Meta-data and tools to work with E. coli. The tools are\nmostly plotting functions to work with circular genomes. They\ncan used with other genomes/plasmids.",
  "License": "GPL (>= 2)",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:30:21 UTC",
  "RemoteUrl": "https://github.com/bioc/ecolitk",
  "RemoteRef": "HEAD",
  "RemoteSha": "6b31c2fe7c678a5be8266521ebad2d8614036039",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 08:34:38 UTC",
    "User": "root"
  },
  "MD5sum": "001bdb006c197c0dc44acacd50f50f71",
  "_user": "bioc",
  "_type": "src",
  "_file": "ecolitk_1.85.0.tar.gz",
  "_fileid": "1b498d3e46933f772ea9b8c64ced9603221500af655529e77a5805bcfbcd8d39",
  "_filesize": 1880000,
  "_sha256": "1b498d3e46933f772ea9b8c64ced9603221500af655529e77a5805bcfbcd8d39",
  "_created": "2026-05-30T08:34:38.000Z",
  "_published": "2026-05-30T12:04:53.790Z",
  "_jobs": [
    {
      "job": 78636909784,
      "time": 152,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7306878992"
    },
    {
      "job": 78636909795,
      "time": 214,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306884974"
    },
    {
      "job": 78636909793,
      "time": 210,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306884640"
    },
    {
      "job": 78636909791,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7308037089"
    },
    {
      "job": 78636909794,
      "time": 105,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7308038310"
    },
    {
      "job": 78636739368,
      "time": 207,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306864422"
    },
    {
      "job": 78636909786,
      "time": 120,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306875975"
    },
    {
      "job": 78636909808,
      "time": 487,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306911866"
    },
    {
      "job": 78636909800,
      "time": 414,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7306904691"
    },
    {
      "job": 78636909802,
      "time": 465,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306909861"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/ecolitk",
  "_commit": {
    "id": "6b31c2fe7c678a5be8266521ebad2d8614036039",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379421
  },
  "_maintainer": {
    "name": "Laurent Gautier",
    "email": "lgautier@gmail.com",
    "login": "lgautier",
    "description": "Data Science, Life Sciences & Healthcare",
    "uuid": 650866
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "ecoliLeucine",
      "role": "Suggests"
    },
    {
      "package": "ecolicdf",
      "role": "Suggests"
    },
    {
      "package": "graph",
      "role": "Suggests"
    },
    {
      "package": "multtest",
      "role": "Suggests"
    },
    {
      "package": "affy",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.85.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.84.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 561,
    "source": "https://www.bioconductor.org/packages/stats/bioc/ecolitk"
  },
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ecolitk.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "arrowsArc",
    "chromPos2angle",
    "cPlotCircle",
    "ecoli.len",
    "gccontent",
    "linesArc",
    "linesChrom",
    "linesCircle",
    "linkedmultiget",
    "pointsArc",
    "polar2xy",
    "polygonArc",
    "polygonChrom",
    "polygonDisk",
    "rotate",
    "wstringapply",
    "xy2polar"
  ],
  "_datasets": [
    {
      "name": "ecoli.m52.genome",
      "title": "Escherichia coli data",
      "object": "ecoli.m52.genome",
      "file": "ecoli.m52.genome.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "ecoli.operon",
      "title": "Escherichia coli data",
      "object": "ecoli.genome",
      "file": "ecoli.genome.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "gene.name",
        "gene.annotation",
        "operon.name",
        "operon.comments"
      ],
      "rows": 932,
      "table": true,
      "tojson": true
    },
    {
      "name": "ecoligenome.operon",
      "title": "Known operon in E.coli - data.frame",
      "object": "ecoligenome.operon",
      "file": "ecoligenome.operon.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "gene.name",
        "gene.annotation",
        "operon.name",
        "operon.comments"
      ],
      "rows": 548,
      "table": true,
      "tojson": true
    },
    {
      "name": "ecoligenomeBNUM",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeBNUM",
      "file": "ecoligenomeBNUM.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2ENZYME",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeBNUM2ENZYME",
      "file": "ecoligenomeBNUM2ENZYME.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2GENBANK",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeBNUM2GENBANK",
      "file": "ecoligenomeBNUM2GENBANK.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2GENEPRODUCT",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeBNUM2GENEPRODUCT",
      "file": "ecoligenomeBNUM2GENEPRODUCT.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2MULTIFUN",
      "title": "Environment",
      "object": "ecoligenomeBNUM2MULTIFUN",
      "file": "ecoligenomeBNUM2MULTIFUN.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2STRAND",
      "title": "Environment",
      "object": "ecoligenomeBNUM2STRAND",
      "file": "ecoligenomeBNUM2STRAND.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeBNUM2SYMBOL",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeBNUM2SYMBOL",
      "file": "ecoligenomeBNUM2SYMBOL.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeCHRLOC",
      "title": "Escherichia coli data",
      "object": "ecoligenomeCHRLOC",
      "file": "ecoligenomeCHRLOC.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeMULTIFUN2GO",
      "title": "multiFun classification",
      "object": "ecoligenomeMULTIFUN2GO",
      "file": "ecoligenomeMULTIFUN2GO.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeSTRAND",
      "title": "Escherichia coli data",
      "object": "ecoligenomeSTRAND",
      "file": "ecoligenomeSTRAND.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeSYMBOL",
      "title": "Escherichia coli data",
      "object": "ecoligenomeSYMBOL",
      "file": "ecoligenomeSYMBOL.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeSYMBOL2AFFY",
      "title": "Escherichia coli data",
      "object": "ecoligenomeSYMBOL2AFFY",
      "file": "ecoligenomeSYMBOL2AFFY.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ecoligenomeSYMBOL2BNUM",
      "title": "Environment for 'bnum' identifiers",
      "object": "ecoligenomeSYMBOL2BNUM",
      "file": "ecoligenomeSYMBOL2BNUM.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "multiFun",
      "title": "multiFun classification",
      "object": "multiFun",
      "file": "multiFun.rda",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "ecoli.data",
      "title": "Escherichia coli data",
      "topics": [
        "ecoli.len",
        "ecoli.m52.genome",
        "ecoli.operon",
        "ecoligenomeCHRLOC",
        "ecoligenomeSTRAND",
        "ecoligenomeSYMBOL",
        "ecoligenomeSYMBOL2AFFY"
      ]
    },
    {
      "page": "ecoligenome.operon",
      "title": "Known operon in E.coli - data.frame",
      "topics": [
        "ecoligenome.operon"
      ]
    },
    {
      "page": "ecoligenomeBNUM",
      "title": "Environment for 'bnum' identifiers",
      "topics": [
        "ecoligenomeBNUM",
        "ecoligenomeBNUM2ENZYME",
        "ecoligenomeBNUM2GENBANK",
        "ecoligenomeBNUM2GENEPRODUCT",
        "ecoligenomeBNUM2SYMBOL",
        "ecoligenomeSYMBOL2BNUM"
      ]
    },
    {
      "page": "ecoligenomeBNUM2MULTIFUN",
      "title": "Environment",
      "topics": [
        "ecoligenomeBNUM2MULTIFUN",
        "ecoligenomeBNUM2STRAND"
      ]
    },
    {
      "page": "gccontent",
      "title": "function to compute gccontent",
      "topics": [
        "gccontent"
      ]
    },
    {
      "page": "linkedmultiget",
      "title": "A function to look for values across linked environments",
      "topics": [
        "linkedmultiget"
      ]
    },
    {
      "page": "multiFun",
      "title": "multiFun classification",
      "topics": [
        "ecoligenomeMULTIFUN2GO",
        "multiFun"
      ]
    },
    {
      "page": "pointsCircle",
      "title": "Functions to plot circular related figures",
      "topics": [
        "arrowsArc",
        "linesArc",
        "linesCircle",
        "pointsArc",
        "polygonArc",
        "polygonDisk"
      ]
    },
    {
      "page": "polar2xy",
      "title": "Functions to perform polar coordinate related functions",
      "topics": [
        "polar2xy",
        "rotate",
        "xy2polar"
      ]
    },
    {
      "page": "polygonChrom",
      "title": "Functions to plot circular chromosomes informations",
      "topics": [
        "chromPos2angle",
        "cPlotCircle",
        "linesChrom",
        "polygonChrom"
      ]
    },
    {
      "page": "wstringapply",
      "title": "Apply a function on a window sliding on a string",
      "topics": [
        "wstringapply"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics"
  ],
  "_vignettes": [
    {
      "source": "ecolitk.Rnw",
      "filename": "ecolitk.pdf",
      "title": "ecolitk",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 19:50:05",
      "modified": "2013-11-01 19:50:05",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "ecolitk",
  "_universes": [
    "bioc",
    "lgautier"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-05-30T08:38:04.000Z",
      "distro": "noble",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "7f22fa24ea47e640831afb921c6ad12c7213187a61f4c22afc9ad2da8d8ceb75",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-05-30T08:38:08.000Z",
      "distro": "noble",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "913f17ee53e44ce1a741c3be6f565c6e2c7691d4a0e55a34ab595df5b113085a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-05-30T12:04:09.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "02b7634c7042149bf639858d2eb1d2298f1dab488594b6c0419214cb3e84b539",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-05-30T12:04:16.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "b513757fe55c3f87ece0aefe211981ebb03d7d04157852893fafebdfd18b04c2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.85.0",
      "date": "2026-05-30T08:36:56.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "ec32c34f953f2d01771db49ecd0700cf4ebbd2ca9cb3f45d5fa61a4f41e974dd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-05-30T08:42:32.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "b56c0852486f61e13cef6d841f2088c22006894168c1eba96965465fa94ddfa0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-05-30T08:41:26.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "78bf430398f9fd16b7381227b0393fea5ef7fbb16ad2d3d00e70a78852707eb9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-05-30T08:42:14.000Z",
      "commit": "6b31c2fe7c678a5be8266521ebad2d8614036039",
      "fileid": "569c800a5338f5b060d7a8ea91c3517d638c593655b2e179abc44233cbc22d25",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679296356"
    }
  ]
}