{ "_id": "6aabcf773d719c1f8406f2ce", "Package": "easyreporting", "Type": "Package", "Title": "Helps creating report for improving Reproducible Computational\nResearch", "Version": "1.25.0", "Authors@R": "person(\"Dario\", \"Righelli\", email=\"dario.righelli@gmail.com\", \nrole=c(\"cre\", \"aut\"))", "Description": "An S4 class for facilitating the automated creation of\nrmarkdown files inside other packages/software even without\nknowing rmarkdown language. Best if implemented in functions as\n\"recursive\" style programming.", "License": "Artistic-2.0", "Encoding": "UTF-8", "biocViews": "ReportWriting", "BugReports": "https://github.com/drighelli/easyreporting/issues", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:51:35 UTC", "RemoteUrl": "https://github.com/bioc/easyreporting", "RemoteRef": "HEAD", "RemoteSha": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-17 10:26:08 UTC", "User": "root" }, "Author": "Dario Righelli [cre, aut]", "Maintainer": "Dario Righelli ", "_user": "bioc", "_type": "src", "_file": "easyreporting_1.25.0.tar.gz", "_fileid": "https://r2.ropensci.org/7053ed1b4ff5daa6228c61f3ac0c5968149b611e429d1d2e9218407873850799", "_filesize": 2784508, "_sha256": "7053ed1b4ff5daa6228c61f3ac0c5968149b611e429d1d2e9218407873850799", "_expires": "2026-12-26T11:31:01.000Z", "_created": "2026-09-17T10:26:08.000Z", "_published": "2026-09-17T11:31:03.289Z", "_bioccheck": { "error": 1, "warning": 4, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255", "_status": "success", "_upstream": "https://github.com/bioc/easyreporting", "_commit": { "id": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380695 }, "_maintainer": { "name": "Dario Righelli", "email": "dario.righelli@gmail.com", "login": "drighelli", "twitter": "@drighelli", "description": "Pure computer scientist, biology enthusiast, love thinking into the wild, photo-shooting monsters and sipping/brewing India Pale Ale.", "uuid": 22836149 }, "_distro": "resolute", "_jobs": [ { "job": 105166596997, "time": 175, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "10491762090" }, { "job": 105166597009, "time": 274, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10491961510" }, { "job": 105166596961, "time": 194, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10490769698" }, { "job": 105166596947, "time": 77, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "10494816580" }, { "job": 105166596953, "time": 124, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "10494936708" }, { "job": 105165352808, "time": 258, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10491398343" }, { "job": 105166596984, "time": 188, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10491634376" }, { "job": 105166597010, "time": 101, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10491722080" }, { "job": 105166597118, "time": 98, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "10491896368" }, { "job": 105166597026, "time": 120, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10490779609" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rmarkdown", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "distill", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "edgeR", "role": "Suggests" }, { "package": "limma", "role": "Suggests" }, { "package": "EDASeq", "role": "Suggests" }, { "package": "statmod", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.25.0", "bioc": "3.24" }, { "branch": "release", "version": "1.24.0", "bioc": "3.23" } ], "_topics": [ "reportwriting" ], "_stars": 2, "_contributors": [ { "user": "drighelli", "count": 41, "uuid": 22836149 }, { "user": "nturaga", "count": 4, "uuid": 2746443 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 467, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 379, "source": "https://www.bioconductor.org/packages/stats/bioc/easyreporting" }, "_mentions": 1, "_devurl": "https://github.com/drighelli/easyreporting", "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/easyreporting.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/drighelli/easyreporting", "_realowner": "bioc", "_cranurl": false, "_exports": [ "addResource", "compile", "easyreporting", "erGUIVolcano", "getBibliography", "getOptionsList", "getReportFilename", "makeOptionsList", "mkdCodeChunkCommented", "mkdCodeChunkComplete", "mkdCodeChunkEnd", "mkdCodeChunkSt", "mkdCodeChunkTitledCommented", "mkdGeneralMsg", "mkdGeneralTitledMsg", "mkdTitle", "mkdVariableAssignment", "setBibliography", "setOptionsList" ], "_help": [ { "page": "addResource", "title": "addResource", "topics": [ "addResource" ] }, { "page": "addResource-easyreporting-method", "title": "addResource", "topics": [ "addResource,easyreporting-method" ] }, { "page": "compile", "title": "compile", "topics": [ "compile" ] }, { "page": "compile-easyreporting-method", "title": "compile", "topics": [ "compile,easyreporting-method" ] }, { "page": "easyreporting-class", "title": "easyreporting", "topics": [ "easyreporting", "easyreporting-class" ] }, { "page": "erGUIVolcano", "title": "erGUIVolcano", "topics": [ "erGUIVolcano" ] }, { "page": "getBibliography", "title": "getBibliography", "topics": [ "getBibliography" ] }, { "page": "getBibliography-easyreporting-method", "title": "getBibliography", "topics": [ "getBibliography,easyreporting-method" ] }, { "page": "getOptionsList", "title": "getOptionsList", "topics": [ "getOptionsList" ] }, { "page": "getOptionsList-easyreporting-method", "title": "getOptionsList", "topics": [ "getOptionsList,easyreporting-method" ] }, { "page": "getReportFilename", "title": "getReportFilename", "topics": [ "getReportFilename" ] }, { "page": "getReportFilename-easyreporting-method", "title": "getReportFilename", "topics": [ "getReportFilename,easyreporting-method" ] }, { "page": "makeOptionsList", "title": "makeOptionsList", "topics": [ "makeOptionsList" ] }, { "page": "mkdCodeChunkCommented", "title": "mkdCodeChunkCommented", "topics": [ "mkdCodeChunkCommented" ] }, { "page": "mkdCodeChunkCommented-easyreporting-method", "title": "mkdCodeChunkCommented", "topics": [ "mkdCodeChunkCommented,easyreporting-method" ] }, { "page": "mkdCodeChunkComplete", "title": "mkdCodeChunkComplete", "topics": [ "mkdCodeChunkComplete" ] }, { "page": "mkdCodeChunkComplete-easyreporting-method", "title": "mkdCodeChunkComplete", "topics": [ "mkdCodeChunkComplete,easyreporting-method" ] }, { "page": "mkdCodeChunkEnd", "title": "mkdCodeChunkEnd", "topics": [ "mkdCodeChunkEnd" ] }, { "page": "mkdCodeChunkEnd-easyreporting-method", "title": "mkdCodeChunkEnd", "topics": [ "mkdCodeChunkEnd,easyreporting-method" ] }, { "page": "mkdCodeChunkSt", "title": "mkdCodeChunkSt", "topics": [ "mkdCodeChunkSt" ] }, { "page": "mkdCodeChunkSt-easyreporting-method", "title": "mkdCodeChunkSt", "topics": [ "mkdCodeChunkSt,easyreporting-method" ] }, { "page": "mkdCodeChunkTitledCommented", "title": "mkdCodeChunkCommented", "topics": [ "mkdCodeChunkTitledCommented" ] }, { "page": "mkdCodeChunkTitledCommented-easyreporting-method", "title": "mkdCodeChunkTitledCommented", "topics": [ "mkdCodeChunkTitledCommented,easyreporting-method" ] }, { "page": "mkdGeneralMsg", "title": "mkdGeneralMsg", "topics": [ "mkdGeneralMsg" ] }, { "page": "mkdGeneralMsg-easyreporting-method", "title": "mkdGeneralMsg", "topics": [ "mkdGeneralMsg,easyreporting-method" ] }, { "page": "mkdGeneralTitledMsg", "title": "mkdGeneralTitledMsg", "topics": [ "mkdGeneralTitledMsg" ] }, { "page": "mkdGeneralTitledMsg-easyreporting-method", "title": "mkdGeneralTitledMsg", "topics": [ "mkdGeneralTitledMsg,easyreporting-method" ] }, { "page": "mkdTitle", "title": "mkdTitle", "topics": [ "mkdTitle" ] }, { "page": "mkdTitle-easyreporting-method", "title": "mkdTitle", "topics": [ "mkdTitle,easyreporting-method" ] }, { "page": "mkdVariableAssignment", "title": "mkdVariableAssignment", "topics": [ "mkdVariableAssignment" ] }, { "page": "mkdVariableAssignment-easyreporting-method", "title": "mkdVariableAssignment", "topics": [ "mkdVariableAssignment,easyreporting-method" ] }, { "page": "setBibliography", "title": "setBibliography", "topics": [ "setBibliography" ] }, { "page": "setOptionsList", "title": "setOptionsList", "topics": [ "setOptionsList" ] }, { "page": "setOptionsList-easyreporting-method", "title": "setOptionsList", "topics": [ "setOptionsList,easyreporting-method" ] } ], "_readme": "https://github.com/bioc/easyreporting/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "commonmark", "digest", "evaluate", "fastmap", "fontawesome", "fs", "glue", "highr", "htmltools", "httpuv", "jquerylib", "jsonlite", "knitr", "later", "lifecycle", "magrittr", "memoise", "mime", "otel", "promises", "R6", "rappdirs", "Rcpp", "rlang", "rmarkdown", "sass", "shiny", "sourcetools", "tinytex", "withr", "xfun", "xtable", "yaml" ], "_vignettes": [ { "source": "bio_usage.rmd", "filename": "bio_usage.html", "title": "Bio Pipeline Usage", "author": "Dario Righelli", "engine": "knitr::rmarkdown", "headings": [ "Description", "Requirements", "easyreporting instance creation", "Loading Data", "Counts exploration", "Differential expression", "Inspecting DEGs", "Compiling the report", "Session Info" ], "created": "2019-07-15 16:18:40", "modified": "2021-03-08 16:57:20", "commits": 15 }, { "source": "standard_usage.rmd", "filename": "standard_usage.html", "title": "easyreporting standard usage", "author": "Dario Righelli", "engine": "knitr::rmarkdown", "headings": [ "Description", "Requirements", "easyreporting instance creation", "Code Chunks", "Manually creating a code chunk", "Code Chunks Options", "Adding personal files to source", "Complete chunk creation", "Compiling the report", "Session Info" ], "created": "2019-07-08 15:24:50", "modified": "2021-03-08 16:57:20", "commits": 14 } ], "_score": 4.6020599913279625, "_indexed": true, "_nocasepkg": "easyreporting", "_universes": [ "bioc", "drighelli" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.25.0", "date": "2026-09-17T10:30:46.000Z", "distro": "resolute", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/693b9768728fac71ead8f89739d4f56a166e2998347951d32db22812f167c37f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.6.1", "os": "linux", "version": "1.25.0", "date": "2026-09-17T10:29:28.000Z", "distro": "resolute", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/c1b2e0be317b5b628243ca3837cf100283b3a7bae302b58b96a36449d49473de", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.5.3", "os": "mac", "version": "1.25.0", "date": "2026-09-17T11:29:51.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/5b184a54575b44ddd3bd36a2edc435093df5d86ae1f8520fb323232876667cce", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.6.1", "os": "mac", "version": "1.25.0", "date": "2026-09-17T11:30:18.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/8441af2cdc94fafd54cdbe4203cfca7c30bd1263a5865db75effc8602279b6e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.6.0", "os": "wasm", "version": "1.25.0", "date": "2026-09-17T10:29:35.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/1603ff58f4f7ed2b31945786b865536da9589e20986cb9a249dd53831b9da84c", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.7.0", "os": "win", "version": "1.25.0", "date": "2026-09-17T10:27:42.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/6e3ed86c5fec46d084d8ebdcde36df5c8384aec7c27e6e1f282e8b44e898a1e9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.5.3", "os": "win", "version": "1.25.0", "date": "2026-09-17T10:27:46.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/40a33188edb3b60dc441e5b81d7f6391caf05ab6d695254cf12a409d3762a203", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" }, { "r": "4.6.1", "os": "win", "version": "1.25.0", "date": "2026-09-17T10:28:00.000Z", "commit": "2fb7ec4489cea32c2e4bf479b67d6afaac41b4a1", "fileid": "https://r2.ropensci.org/10c97dabaaffa4ead2dba435fe7867fa115933b4054518114abb5a72e6308160", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35210087255" } ] }