{ "_id": "6a4948e7a788432aeabf45bc", "Package": "dyebias", "Title": "The GASSCO method for correcting for slide-dependent\ngene-specific dye bias", "Version": "1.73.0", "Date": "2 March 2016", "Author": "Philip Lijnzaad and Thanasis Margaritis", "Description": "Many two-colour hybridizations suffer from a dye bias that\nis both gene-specific and slide-specific. The former depends on\nthe content of the nucleotide used for labeling; the latter\ndepends on the labeling percentage. The slide-dependency was\nhitherto not recognized, and made addressing the artefact\nimpossible. Given a reasonable number of dye-swapped pairs of\nhybridizations, or of same vs. same hybridizations, both the\ngene- and slide-biases can be estimated and corrected using the\nGASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009),\ndoi:10.1038/msb.2009.21)", "Maintainer": "Philip Lijnzaad ", "License": "GPL-3", "URL": "http://www.holstegelab.nl/publications/margaritis_lijnzaad", "biocViews": "Microarray, TwoChannel, QualityControl, Preprocessing", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:49 UTC", "RemoteUrl": "https://github.com/bioc/dyebias", "RemoteRef": "HEAD", "RemoteSha": "2344221e76264971831dee33405e81dba36698ec", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 13:11:17 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "dyebias_1.73.0.tar.gz", "_fileid": "https://r2.ropensci.org/045df101e8a8f529154e8b0b0c9df891a65e44321e9437427bb3a743be2b3ebe", "_filesize": 2801280, "_sha256": "045df101e8a8f529154e8b0b0c9df891a65e44321e9437427bb3a743be2b3ebe", "_expires": "2026-10-12T17:54:45.000Z", "_created": "2026-07-03T13:11:17.000Z", "_published": "2026-07-04T17:54:47.579Z", "_bioccheck": { "error": 3, "warning": 4, "note": 16 }, 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