{ "_id": "6aca17fdfe5cc25786e8499e", "Package": "dominatRData", "Type": "Package", "Title": "Datasets for R Package dominatR", "Version": "1.1.0", "Authors@R": "c(\nperson(\ngiven = \"Simon\",\nfamily = \"Lizarazo\",\nrole = c(\"aut\", \"cre\"),\nemail = \"silizarazoch@gmail.com\",\ncomment = c(ORCID = \"0009-0001-8974-6225\")\n),\nperson(\ngiven = \"Ethan\",\nfamily = \"Chen\",\nrole = c(\"ctb\"),\nemail = \"yitian7@illinois.edu\"\n),\nperson(\ngiven = \"Rajendra\",\nfamily = \"K C\",\nrole = c(\"ctb\")\n),\nperson(\ngiven = \"Kevin\",\nfamily = \"Van Bortle\",\nrole = c(\"ctb\"),\nemail = \"kvbortle@illinois.edu\")\n)", "Description": "dominatRData is a data package useful for showcasing\ndominatR examples. dominatR is an R package for quantifying and\nvisualizing feature dominance in datasets. dominatR makes use\nof entropy-based triangular projections and compositional\ncomparison metrics.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "biocViews": "ExperimentData, ChIPSeqData, Tissue, PackageTypeData", "LazyData": "false", "URL": "https://github.com/VanBortleLab/dominatRData", "BugReports": "https://github.com/VanBortleLab/dominatRData/issues", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:38:09 UTC", "RemoteUrl": "https://github.com/bioc/dominatRData", "RemoteRef": "HEAD", "RemoteSha": "f277c5631bf7188b6bbcd42b3224ad7367766abf", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:44:36 UTC", "User": "root" }, "Author": "Simon Lizarazo [aut, cre] (ORCID:\n),\nEthan Chen [ctb],\nRajendra K C [ctb],\nKevin Van Bortle [ctb]", "Maintainer": "Simon Lizarazo ", "_user": "bioc", "_type": "src", "_file": "dominatRData_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/c86194f9a0fcb64b7d9a5ea1870769dc3722d523379d36172a7ed0f639a46aab", "_filesize": 498863, "_sha256": "c86194f9a0fcb64b7d9a5ea1870769dc3722d523379d36172a7ed0f639a46aab", "_expires": "2027-01-18T10:48:27.000Z", "_created": "2026-10-10T10:44:36.000Z", "_published": "2026-10-10T10:48:29.082Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045819368", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 1, "note": 4 }, "_upstream": "https://github.com/bioc/dominatRData", "_commit": { "id": "f277c5631bf7188b6bbcd42b3224ad7367766abf", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379889 }, "_maintainer": { "name": "Simon Lizarazo", "email": "silizarazoch@gmail.com", "orcid": "0009-0001-8974-6225" }, "_distro": "resolute", "_jobs": [ { "job": 114195486874, "time": 149, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11667724077" }, { "job": 114195486965, "time": 182, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11667770118" }, { "job": 114195486912, "time": 195, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11667780053" }, { "job": 114195075969, "time": 141, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11666873489" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 1 }, { "week": "2025-43", "n": 1 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "chipseqdata", "tissue", "packagetypedata", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "slizarazo21", "count": 16, "uuid": 124115449 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/vanbortlelab/dominatrdata", "_searchresults": 4, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/dominatRData.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "atac_tissue_counts", "title": "ATAC-Seq rawcounts for POL3 Genes Dataframe", "object": "atac_tissue_counts", "file": "atac_tissue_counts.rda", "class": [ "data.frame" ], "fields": [ "core_type", "Chr", "Start", "End", "Gene", "Index", "Type", "Heart", "Spleen", "Liver", "Colon", "Adrenal.Gland", "Lung", "Pancreas", "Gallbladder", "Urinary.Tract", "Breast", "Fallopian.Tube", "Psoas.Muscle", "Vena.Cava", "Gastroesophageal.Sphincter", "Adipose.Tissue", "Sciatic.Nerve", "Ovary...Uterus", "Stomach", "Brain" ], "rows": 9817, "table": true, "tojson": true }, { "name": "atac_tissue_score", "title": "ATAC-Seq Score for POL3 Genes Dataframe", "object": "atac_tissue_score", "file": "atac_tissue_score.rda", "class": [ "data.frame" ], "fields": [ "core_type", "Chr", "Start", "End", "Gene", "Index", "Type", "Heart", "Spleen", "Liver", "Colon", "Adrenal.Gland", "Lung", "Pancreas", "Gallbladder", "Urinary.Tract", "Breast", "Fallopian.Tube", "Psoas.Muscle", "Vena.Cava", "Gastroesophageal.Sphincter", "Adipose.Tissue", "Sciatic.Nerve", "Ovary...Uterus", "Stomach", "Brain" ], "rows": 9817, "table": true, "tojson": true }, { "name": "rnapol_counts", "title": "RNA Polymerase raw counts dataframe", "object": "rnapol_counts", "file": "rnapol_counts.rda", "class": [ "data.frame" ], "fields": [ "Chr", "Start", "Stop", "RNA_type", "pol1", "pol2", "pol3" ], "rows": 856, "table": true, "tojson": true }, { "name": "rnapol_score", "title": "RNA Polymerase score dataframe", "object": "rnapol_score", "file": "rnapol_score.rda", "class": [ "data.frame" ], "fields": [ "Chr", "Start", "Stop", "RNA_type", "pol1", "pol2", "pol3" ], "rows": 906, "table": true, "tojson": true } ], "_help": [ { "page": "atac_tissue_counts", "title": "ATAC-Seq rawcounts for POL3 Genes Dataframe", "topics": [ "atac_tissue_counts" ] }, { "page": "atac_tissue_score", "title": "ATAC-Seq Score for POL3 Genes Dataframe", "topics": [ "atac_tissue_score" ] }, { "page": "rnapol_counts", "title": "RNA Polymerase raw counts dataframe", "topics": [ "rnapol_counts" ] }, { "page": "rnapol_score", "title": "RNA Polymerase score dataframe", "topics": [ "rnapol_score" ] } ], "_readme": "https://github.com/bioc/dominatRData/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "dominatRData.Rmd", "filename": "dominatRData.html", "title": "dominatRData", "author": "Simon Lizarazo, Ethan Chen, Rajendra K C, Kevin Van Bortle", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Installation", "From Rajendra K C et al", "From Simon Lizarazo et al 2025" ], "created": "2025-09-07 05:11:13", "modified": "2025-10-22 16:32:24", "commits": 2 } ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "dominatrdata", "_universes": [ "bioc", "vanbortlelab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-10-10T10:47:43.000Z", "distro": "resolute", "commit": "f277c5631bf7188b6bbcd42b3224ad7367766abf", "fileid": "https://r2.ropensci.org/b7d40dba71af2fd6591a227268d02702b713386bb0af601fc90c50e54cdd2147", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045819368" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-10-10T10:47:59.000Z", "distro": "resolute", "commit": "f277c5631bf7188b6bbcd42b3224ad7367766abf", "fileid": "https://r2.ropensci.org/da1e1f7c35effb4a3318a281b2c340da4ebf8b1f7868b12081e91946f99e5681", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045819368" } ] }