{
  "_id": "6a49b9e5dbd0482285eb79b5",
  "Package": "derfinderHelper",
  "Type": "Package",
  "Title": "derfinder helper package",
  "Version": "1.47.0",
  "Date": "2021-08-05",
  "Authors@R": "c(person(\"Leonardo\", \"Collado-Torres\", role = c(\"aut\", \"cre\"), email\n= \"lcolladotor@gmail.com\", comment = c(ORCID = \"0000-0003-2140-308X\")),\nperson(c(\"Andrew\", \"E.\"), \"Jaffe\", role = \"aut\",\nemail = \"andrew.jaffe@libd.org\", comment = c(ORCID = \"0000-0001-6886-1454\")),\nperson(c(\"Jeffrey\", \"T.\"), \"Leek\", role = c(\"aut\", \"ths\"),\nemail = \"jtleek@gmail.com\", comment = c(ORCID = \"0000-0002-2873-2671\")))",
  "VignetteBuilder": "knitr",
  "Description": "Helper package for speeding up the derfinder package when\nusing multiple cores. This package is particularly useful when\nusing BiocParallel and it helps reduce the time spent loading\nthe full derfinder package when running the F-statistics\ncalculation in parallel.",
  "License": "Artistic-2.0",
  "URL": "https://github.com/leekgroup/derfinderHelper",
  "BugReports": "https://support.bioconductor.org/t/derfinderHelper",
  "biocViews": "DifferentialExpression, Sequencing, RNASeq, Software,\nImmunoOncology",
  "RoxygenNote": "7.2.3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:52 UTC",
  "RemoteUrl": "https://github.com/bioc/derfinderHelper",
  "RemoteRef": "HEAD",
  "RemoteSha": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-05 01:52:26 UTC",
    "User": "root"
  },
  "Author": "Leonardo Collado-Torres [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2140-308X>),\nAndrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>),\nJeffrey T. Leek [aut, ths] (ORCID:\n<https://orcid.org/0000-0002-2873-2671>)",
  "Maintainer": "Leonardo Collado-Torres <lcolladotor@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "derfinderHelper_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/ffb1b2649919dde015e719b15122a8d7fd9593112a4f88ca58942b76e8617d50",
  "_filesize": 117257,
  "_sha256": "ffb1b2649919dde015e719b15122a8d7fd9593112a4f88ca58942b76e8617d50",
  "_expires": "2026-10-13T01:56:52.000Z",
  "_created": "2026-07-05T01:52:26.000Z",
  "_published": "2026-07-05T01:56:53.673Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723",
  "_status": "success",
  "_upstream": "https://github.com/bioc/derfinderHelper",
  "_commit": {
    "id": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379992
  },
  "_maintainer": {
    "name": "Leonardo Collado-Torres",
    "email": "lcolladotor@gmail.com",
    "login": "lcolladotor",
    "bluesky": "@lcolladotor.bsky.social",
    "linkedin": "in/lcollado",
    "twitter": "@lcolladotor",
    "description": "Find more information about myself at my website where I post my recent publications, talks, blog posts and other updates.",
    "uuid": 2288213,
    "orcid": "0000-0003-2140-308X"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85183915126,
      "time": 189,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8087362653"
    },
    {
      "job": 85183915150,
      "time": 190,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8087362980"
    },
    {
      "job": 85183915131,
      "time": 227,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087367002"
    },
    {
      "job": 85183915146,
      "time": 91,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8087351783"
    },
    {
      "job": 85183915135,
      "time": 86,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087351136"
    },
    {
      "job": 85183739566,
      "time": 193,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087340414"
    },
    {
      "job": 85183915137,
      "time": 145,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8087357733"
    },
    {
      "job": 85183915145,
      "time": 107,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8087353547"
    },
    {
      "job": 85183915154,
      "time": 106,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8087353474"
    },
    {
      "job": 85183915142,
      "time": 115,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087354626"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.2",
      "role": "Depends"
    },
    {
      "package": "IRanges",
      "version": ">= 1.99.27",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "version": ">= 0.2.2",
      "role": "Imports"
    },
    {
      "package": "sessioninfo",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "version": ">= 1.6",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "version": ">= 2.5.19",
      "role": "Suggests"
    },
    {
      "package": "RefManageR",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "version": ">= 0.3.3",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 7,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "differentialexpression",
    "sequencing",
    "rnaseq",
    "software",
    "immunooncology",
    "bioconductor",
    "derfinder"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "lcolladotor",
      "count": 309,
      "uuid": 2288213
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "jwokaty",
      "count": 14,
      "uuid": 1744257
    },
    {
      "user": "dtenenba",
      "count": 10,
      "uuid": 2286826
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/leekgroup/derfinderhelper",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/derfinderHelper.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/leekgroup/derfinderhelper",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "fstats.apply"
  ],
  "_help": [
    {
      "page": "fstats.apply",
      "title": "Calculate F-statistics per base by extracting chunks from a DataFrame",
      "topics": [
        "fstats.apply"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/derfinderHelper/raw/HEAD/README.md",
  "_rundeps": [
    "BiocGenerics",
    "generics",
    "IRanges",
    "lattice",
    "Matrix",
    "S4Vectors"
  ],
  "_vignettes": [
    {
      "source": "derfinderHelper.Rmd",
      "filename": "derfinderHelper.html",
      "title": "Introduction to derfinderHelper",
      "author": "Leonardo Collado-Torres",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basics",
        "Install r Biocpkg('derfinderHelper')",
        "Required knowledge",
        "Asking for help",
        "Citing r Biocpkg('derfinderHelper')",
        "Introduction to r Biocpkg('derfinderHelper')",
        "Example",
        "Data",
        "Models",
        "Get F-statistics",
        "Details",
        "Reproducibility",
        "Bibliography"
      ],
      "created": "2014-09-23 23:19:10",
      "modified": "2024-12-12 21:16:03",
      "commits": 34
    }
  ],
  "_score": 6.19728055812562,
  "_indexed": true,
  "_nocasepkg": "derfinderhelper",
  "_universes": [
    "bioc",
    "lcolladotor",
    "leekgroup"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-05T01:55:09.000Z",
      "distro": "resolute",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/41bd6dfd1cb4ca4276737b08838de805d9a2856f5af5671a81e9462893f1b445",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-05T01:55:42.000Z",
      "distro": "resolute",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/c3d016e0700d12208c7d5e8064303cbc47717586aa1aa09b3e6bcf71867f8659",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-05T01:53:52.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/1574f458859bb6ac092459f68d2980ff2732eb3a180b79fbe7ee288bdf044e8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-05T01:53:44.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/6e8ac4e2db4a7f8afdc97780def69286fda601ea59b4f8bbca1d33426770ca27",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-05T01:55:09.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/7e53e60239c85eeb94a856756c82ee07b7fc8ca5639144822be633277a020a89",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-05T01:53:42.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/c17d507eeb77d946c235bb20035973915bfe791dc19485b09be834ea610366fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-05T01:53:38.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/4f7d2574732e2de633e1fe1bdab9987fdb45ef1aa7485b43f3c467637c2fcf80",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-05T01:53:56.000Z",
      "commit": "b9a9c2e6d883e352172eaf64b9e70a7dc4e25b11",
      "fileid": "https://r2.ropensci.org/25b48898baf6fac57cffcb16d33e92e07b6d74f3cece4b471f91e26c1ba1c96e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28726112723"
    }
  ]
}