{ "_id": "6a17e29bacfb0bcc41d9fa99", "Package": "demuxSNP", "Title": "scRNAseq demultiplexing using cell hashing and SNPs", "Version": "1.11.0", "Authors@R": "c(\nperson(\"Michael\", \"Lynch\",\nemail = \"michael.lynch@ul.ie\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9535-6461\")),\nperson(\"Aedin\", \"Culhane\",\nemail = \"aedin.culhane@ul.ie\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1395-9734\")))", "Description": "This package assists in demultiplexing scRNAseq data using\nboth cell hashing and SNPs data. The SNP profile of each group\nos learned using high confidence assignments from the cell\nhashing data. Cells which cannot be assigned with high\nconfidence from the cell hashing data are assigned to their\nmost similar group based on their SNPs. We also provide some\nhelper function to optimise SNP selection, create training data\nand merge SNP data into the SingleCellExperiment framework.", "URL": "https://github.com/michaelplynch/demuxSNP", "BugReports": "https://github.com/michaelplynch/demuxSNP/issues", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "biocViews": "Classification, SingleCell", "VignetteBuilder": "knitr", "LazyData": "false", "Config/testthat/edition": "3", "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libpng-dev libxml2-dev\nlibssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:00:55 UTC", "RemoteUrl": "https://github.com/bioc/demuxSNP", "RemoteRef": "HEAD", "RemoteSha": "b893e6de7aebfbd7d5132ccf2d7f1f4cefedfea9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-28 06:24:54 UTC", "User": "root" }, "Author": "Michael Lynch [aut, cre] (ORCID:\n),\nAedin Culhane [aut] (ORCID: )", 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