{ "_id": "6a1ade841d7bb097a09ebab7", "Package": "deconvR", "Title": "Simulation and Deconvolution of Omic Profiles", "Version": "1.19.0", "Date": "2025-07-28", "Authors@R": "c(person(given = \"Irem B.\",\nfamily = \"Gündüz\",\nrole = c(\"aut\", \"cre\"),\nemail = \"irembgunduz@gmail.com\",\ncomment = c(ORCID = \"0000-0003-2641-0916\")),\nperson(given = \"Veronika\",\nfamily = \"Ebenal\",\nrole = c(\"aut\"),\nemail = \"veronikaebenal@gmail.com\",\ncomment = c(ORCID = \"0000-0001-7976-3964\")),\nperson(given = \"Altuna\",\nfamily = \"Akalin\",\nrole = c(\"aut\"),\nemail = \"aakalin@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0468-0117\")))", "Description": "This package provides a collection of functions designed\nfor analyzing deconvolution of the bulk sample(s) using an\natlas of reference omic signature profiles and a user-selected\nmodel. Users are given the option to create or extend a\nreference atlas and,also simulate the desired size of the bulk\nsignature profile of the reference cell types.The package\nincludes the cell-type-specific methylation atlas and, Illumina\nEpic B5 probe ids that can be used in deconvolution.\nAdditionally,we included BSmeth2Probe, to make mapping WGBS\ndata to their probe IDs easier.", "License": "Artistic-2.0", "URL": "https://github.com/BIMSBbioinfo/deconvR", "BugReports": "https://support.bioconductor.org/t/deconvR", "biocViews": "DNAMethylation, Regression, GeneExpression, RNASeq,\nSingleCell, StatisticalMethod, Transcriptomics", "Encoding": "UTF-8", "LazyData": "false", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.1", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libxml2-dev libssl-dev libx11-dev xz-utils\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:57:19 UTC", "RemoteUrl": "https://github.com/bioc/deconvR", "RemoteRef": "HEAD", "RemoteSha": "2779e925bba5bb7b17edf5cc4c1f2038ab176518", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:12:52 UTC", "User": "root" }, "Author": "Irem B. 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