{ "_id": "6ac92196de46216d5edd9f05", "Package": "decontX", "Title": "Decontamination of single cell genomics data", "Version": "1.11.2", "Authors@R": "c(person(\"Yuan\", \"Yin\", , \"yuan_yin@outlook.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9261-6061\")),\nperson(\"Masanao\", \"Yajima\", , \"yajima@bu.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7583-3707\")),\nperson(\"Joshua\", \"Campbell\", , \"camp@bu.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0780-8662\")))", "Description": "This package contains implementation of DecontX (Yang et\nal. 2020), a decontamination algorithm for single-cell RNA-seq,\nand DecontPro (Yin et al. 2024), a decontamination algorithm\nfor single cell protein expression data. DecontX is a novel\nBayesian method to computationally estimate and remove RNA\ncontamination in individual cells without empty droplet\ninformation. DecontPro is a Bayesian method that estimates the\nlevel of contamination from ambient and background sources in\nCITE-seq ADT dataset and decontaminate the dataset.", "License": "MIT + file LICENSE", "URL": "https://github.com/campbio/decontX", "BugReports": "https://github.com/campbio/decontX/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "Config/Needs/coverage": "covr", "Biarch": "true", "SystemRequirements": "GNU make", "VignetteBuilder": "knitr", "biocViews": "SingleCell, Bayesian, GeneExpression, RNASeq, Proteomics,\nPreprocessing, Normalization, QualityControl", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake make libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-10-09 12:56:47 UTC", "RemoteUrl": "https://github.com/bioc/decontX", "RemoteRef": "HEAD", "RemoteSha": "3d7a8aa12671365515fd0509f700764b329288cc", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-09 16:33:08 UTC", "User": "root" }, "Author": "Yuan Yin [aut] (ORCID: ),\nMasanao Yajima [aut] (ORCID: ),\nJoshua Campbell [aut, cre] (ORCID:\n)", "Maintainer": "Joshua Campbell ", "_user": "bioc", "_type": "src", "_file": "decontX_1.11.2.tar.gz", "_fileid": "https://r2.ropensci.org/ec43bbadba4a38d95ec6e6560910c801f6351b43dca2971f130927738a313790", "_filesize": 2040736, "_sha256": "ec43bbadba4a38d95ec6e6560910c801f6351b43dca2971f130927738a313790", "_expires": "2027-01-17T17:17:08.000Z", "_created": "2026-10-09T16:33:08.000Z", "_published": "2026-10-09T17:17:10.436Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37959189134", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 7 }, "_upstream": "https://github.com/bioc/decontX", "_commit": { "id": "3d7a8aa12671365515fd0509f700764b329288cc", "author": "Joshua D. 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