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"getMetaSelector" ] }, { "page": "getMethodDetails", "title": "get the detail boxes after DE method selected", "topics": [ "getMethodDetails" ] }, { "page": "getMostVariedList", "title": "getMostVariedList", "topics": [ "getMostVariedList" ] }, { "page": "getNormalizedMatrix", "title": "getNormalizedMatrix", "topics": [ "getNormalizedMatrix" ] }, { "page": "getOrganism", "title": "getOrganism", "topics": [ "getOrganism" ] }, { "page": "getOrganismBox", "title": "getOrganismBox", "topics": [ "getOrganismBox" ] }, { "page": "getOrganismPathway", "title": "getOrganismPathway", "topics": [ "getOrganismPathway" ] }, { "page": "getPCAcontolUpdatesJS", "title": "getPCAcontolUpdatesJS in the prep menu we have two PCA plots to show how batch effect correction worked. 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"page": "getSearchData", "title": "getSearchData", "topics": [ "getSearchData" ] }, { "page": "getSelectedCols", "title": "getSelectedCols", "topics": [ "getSelectedCols" ] }, { "page": "getSelectedDatasetInput", "title": "getSelectedDatasetInput", "topics": [ "getSelectedDatasetInput" ] }, { "page": "getSelectInputBox", "title": "getSelectInputBox", "topics": [ "getSelectInputBox" ] }, { "page": "getSelHeat", "title": "getSelHeat", "topics": [ "getSelHeat" ] }, { "page": "getShapeColor", "title": "getShapeColor", "topics": [ "getShapeColor" ] }, { "page": "getStartPlotsMsg", "title": "getStartPlotsMsg", "topics": [ "getStartPlotsMsg" ] }, { "page": "getStartupMsg", "title": "getStartupMsg", "topics": [ "getStartupMsg" ] }, { "page": "getTableDetails", "title": "getTableDetails", "topics": [ "getTableDetails" ] }, { "page": "getTableModal", "title": "getTableModal prepares table modal for KEGG", "topics": [ "getTableModal" ] }, { "page": "getTableStyle", "title": "getTableStyle", "topics": [ "getTableStyle" ] }, { "page": "getTabUpdateJS", "title": "getTabUpdateJS prepmenu tab and discovery menu tab updates", "topics": [ "getTabUpdateJS" ] }, { "page": "getUp", "title": "getUp get up regulated data", "topics": [ "getUp" ] }, { "page": "getUpDown", "title": "getUpDown get up+down regulated data", "topics": [ "getUpDown" ] }, { "page": "getVariationData", "title": "getVariationData", "topics": [ "getVariationData" ] }, { "page": "heatmapControlsUI", "title": "heatmapControlsUI", "topics": [ "heatmapControlsUI" ] }, { "page": "heatmapJScode", "title": "heatmapJScode", "topics": [ "heatmapJScode" ] }, { "page": "heatmapServer", "title": "heatmapServer", "topics": [ "heatmapServer" ] }, { "page": "heatmapUI", "title": "heatmapUI", "topics": [ "heatmapUI" ] }, { "page": "hideObj", "title": "hideObj", "topics": [ "hideObj" ] }, { "page": "histogramControlsUI", "title": "histogramControlsUI", "topics": [ "histogramControlsUI" ] }, { "page": "installpack", "title": "installpack", "topics": [ "installpack" ] }, { "page": "IQRPlotControlsUI", "title": "IQRPlotControlsUI", "topics": [ "IQRPlotControlsUI" ] }, { "page": "kmeansControlsUI", "title": "kmeansControlsUI", "topics": [ "kmeansControlsUI" ] }, { "page": "lcfMetRadio", "title": "lcfMetRadio", "topics": [ "lcfMetRadio" ] }, { "page": "loadpack", "title": "loadpack", "topics": [ "loadpack" ] }, { "page": "mainPlotControlsUI", "title": "mainPlotControlsUI", "topics": [ "mainPlotControlsUI" ] }, { "page": "mainScatterNew", "title": "mainScatterNew", "topics": [ "mainScatterNew" ] }, { "page": "niceKmeans", "title": "niceKmeans", "topics": [ "niceKmeans" ] }, { "page": "normalizationMethods", "title": "normalizationMethods", "topics": [ "normalizationMethods" ] }, { "page": "palUI", "title": "palUI", "topics": [ "palUI" ] }, { "page": "panel.cor", "title": "panel.cor", "topics": [ "panel.cor" ] }, { "page": "panel.hist", "title": "panel.hist", "topics": [ "panel.hist" ] }, { "page": 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"removeCols", "topics": [ "removeCols" ] }, { "page": "removeExtraCols", "title": "removeExtraCols", "topics": [ "removeExtraCols" ] }, { "page": "round_vals", "title": "round_vals", "topics": [ "round_vals" ] }, { "page": "run_pca", "title": "run_pca", "topics": [ "run_pca" ] }, { "page": "runDE", "title": "runDE", "topics": [ "runDE" ] }, { "page": "runDESeq2", "title": "runDESeq2", "topics": [ "runDESeq2" ] }, { "page": "runEdgeR", "title": "runEdgeR", "topics": [ "runEdgeR" ] }, { "page": "runHeatmap", "title": "runHeatmap", "topics": [ "runHeatmap" ] }, { "page": "runHeatmap2", "title": "runHeatmap2", "topics": [ "runHeatmap2" ] }, { "page": "runLimma", "title": "runLimma", "topics": [ "runLimma" ] }, { "page": "selectConditions", "title": "selectConditions", "topics": [ "selectConditions" ] }, { "page": "selectedInput", "title": "selectedInput", "topics": [ "selectedInput" ] }, { "page": "selectGroupInfo", "title": "selectGroupInfo", "topics": [ "selectGroupInfo" ] }, { "page": 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