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"extractPairs", "title": "Get top table per pair (ref and comp coef) for scatter plot", "topics": [ "extractPairs" ] }, { "page": "extractQueryList", "title": "Extract query list", "topics": [ "extractQueryList" ] }, { "page": "extractTopTables", "title": "Extract top tables for coefficients of interest", "topics": [ "extractTopTables" ] }, { "page": "extractTTcoef", "title": "Extract top table for a specific coef", "topics": [ "extractTTcoef" ] }, { "page": "facet", "title": "Add facets to ggplot object", "topics": [ "facet" ] }, { "page": "filterCommonFeatures", "title": "Filter top tables based on common features across all tables", "topics": [ "filterCommonFeatures" ] }, { "page": "filterGenesOfInterest", "title": "Filter genes of interest", "topics": [ "filterGenesOfInterest" ] }, { "page": "filterLogFC", "title": "Filter top tables based on logFC threshold", "topics": [ "filterLogFC" ] }, { "page": "formatAesMA", "title": "Format aesthetics for the main plot with MA plot", "topics": [ "formatAesMA" ] }, { "page": "formatAesVP", "title": "Format aesthetics for the main plot with volcano plot", "topics": [ "formatAesVP" ] }, { "page": "formatAesWP", "title": "Format aesthetics for the main plot with waterfall plot", "topics": [ "formatAesWP" ] }, { "page": "formatManualScale", "title": "extend manual scale values if required", "topics": [ "formatManualScale" ] }, { "page": "formatTTcoef", "title": "Format top table for a specific coefficient", "topics": [ "formatTTcoef" ] }, { "page": "formatVariableLength", "title": "shorten string length", "topics": [ "formatVariableLength" ] }, { "page": "formatVariableSpace", "title": "remove space in variable name", "topics": [ "formatVariableSpace" ] }, { "page": "getCoefColor", "title": "Create colors for coefficient labels", "topics": [ "getCoefColor" ] }, { "page": "getCoefLabel", "title": "Get coefficient label", "topics": [ "getCoefLabel" ] }, { "page": "getFeatureColor", "title": "Create colors for feature 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