{ "_id": "6abe525599f7aa8c6aa55578", "Package": "covRNA", "Type": "Package", "Title": "Multivariate Analysis of Transcriptomic Data", "Version": "1.39.0", "Author": "Lara Urban ", "Maintainer": "Lara Urban ", "Description": "This package provides the analysis methods fourthcorner\nand RLQ analysis for large-scale transcriptomic data.", "License": "GPL (>= 2)", "LazyData": "TRUE", "biocViews": "GeneExpression, Transcription", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:33 UTC", "RemoteUrl": "https://github.com/bioc/covRNA", "RemoteRef": "HEAD", "RemoteSha": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-01 12:07:20 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "covRNA_1.39.0.tar.gz", "_fileid": "https://r2.ropensci.org/c1b6d0b78356bc4839da0bad5e8e1d2dfd45be00c47d02e3fe07ed67b5e7123d", "_filesize": 478332, "_sha256": "c1b6d0b78356bc4839da0bad5e8e1d2dfd45be00c47d02e3fe07ed67b5e7123d", "_expires": "2027-01-09T12:30:10.000Z", "_created": "2026-10-01T12:07:20.000Z", "_published": "2026-10-01T12:30:13.383Z", "_bioccheck": { "error": 1, "warning": 2, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845", "_status": "success", "_upstream": "https://github.com/bioc/covRNA", "_commit": { "id": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380213 }, "_maintainer": { "name": "Lara Urban", "email": "lara.h.urban@ebi.ac.uk" }, "_distro": "resolute", "_jobs": [ { "job": 110360724853, "time": 155, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11161196520" }, { "job": 110360724828, "time": 375, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11161542052" }, { "job": 110360724988, "time": 337, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11161556887" }, { "job": 110360725001, "time": 210, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11161759825" }, { "job": 110360725056, "time": 223, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11161354888" }, { "job": 110358551171, "time": 369, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11161515910" }, { "job": 110360724999, "time": 113, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11160657494" }, { "job": 110360725068, "time": 224, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11161176766" }, { "job": 110360724967, "time": 218, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11161141779" }, { "job": 110360725082, "time": 226, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11161291816" } ], "_registered": true, "_dependencies": [ { "package": "ade4", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "parallel", "role": "Imports" }, { "package": "genefilter", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "transcription" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 471, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 484, "source": "https://www.bioconductor.org/packages/stats/bioc/covRNA" }, "_mentions": 1, "_searchresults": 6, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/covRNA.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "ord", "plot.ord", "plot.stat", "stat", "vis" ], "_datasets": [ { "name": "Baca", "title": "The Baca dataset", "object": "Baca", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "covRNA", "title": "The covRNA package", "topics": [ "covRNA" ] }, { "page": "Baca", "title": "The Baca dataset", "topics": [ "Baca" ] }, { "page": "ord", "title": "RLQ for transcriptomic data", "topics": [ "ord" ] }, { "page": "plot.ord", "title": "Plot RLQ for transcriptomic data", "topics": [ "plot.ord" ] }, { "page": "plot.stat", "title": "Plot the fourthcorner analysis for transcriptomic data", "topics": [ "plot.stat" ] }, { "page": "stat", "title": "Fourthcorner analysis for transcriptomic data", "topics": [ "stat" ] }, { "page": "vis", "title": "Simultaneous visualisation of transcriptomic data by combining fourthcorner analysis and RLQ", "topics": [ "vis" ] } ], "_readme": "https://github.com/bioc/covRNA/raw/HEAD/README.md", "_rundeps": [ "ade4", "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "genefilter", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "pixmap", "pkgconfig", "png", "R6", "Rcpp", "RcppArmadillo", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sp", "survival", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "covRNA.Rmd", "filename": "covRNA.html", "title": "An Introduction to covRNA", "author": "Lara Urban", "engine": "knitr::rmarkdown", "headings": [ "Overview of the Analysis", "Analysis of an RNA-Seq Dataset", "Preparation of the dataset", "Fourthcorner Analysis with stat", "RLQ with ord", "Combination of Results", "Comparison with Other Methods", "Gene Annotation", "Installation", "References" ], "created": "2016-05-18 22:39:18", "modified": "2018-08-30 17:47:00", "commits": 4 } ], "_score": 4, "_indexed": true, "_nocasepkg": "covrna", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.39.0", "date": "2026-10-01T12:11:41.000Z", "distro": "resolute", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/7c47b0ad8521f59c51362413c27f2f34837583f90c8ec249dae99096ff807d32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.6.1", "os": "linux", "version": "1.39.0", "date": "2026-10-01T12:10:54.000Z", "distro": "resolute", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/dc110cd9030edd777e690aafe8cc9797549f7010de5e8af4824a26779690f5c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.5.3", "os": "mac", "version": "1.39.0", "date": "2026-10-01T12:26:50.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/5a99de0d75e89665ad6f43cf028b3104ddda7ba4700e89bcf671878c05233bf0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.6.1", "os": "mac", "version": "1.39.0", "date": "2026-10-01T12:27:26.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/e2ebe8ebee44cecc318c08be700b903a904907860a667fe37fcfd411ac697b2f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.6.0", "os": "wasm", "version": "1.39.0", "date": "2026-10-01T12:09:42.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/b5291e993f75ba1105ec42bde4aacbbaed5e594612016179936b78bce8b84f68", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.7.0", "os": "win", "version": "1.39.0", "date": "2026-10-01T12:08:47.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/27a04d15af983b3421bd80d13795b247b2f036702dce1981bae6ad29b7441309", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.5.3", "os": "win", "version": "1.39.0", "date": "2026-10-01T12:08:45.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/65c7f75de73a1007ef303479785cd671a34acf1e428f9388a39eb2949f618314", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" }, { "r": "4.6.1", "os": "win", "version": "1.39.0", "date": "2026-10-01T12:08:49.000Z", "commit": "cb8c26b1bb3aac364d4ce4a8e929a788eafdee88", "fileid": "https://r2.ropensci.org/7b91bb2b385b61b41a95aa831fc6269bb627cd561060d46af8441ae54d7f9c37", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/36859042845" } ] }