{ "_id": "6a1af5421d7bb097a09f925c", "Package": "cosmiq", "Type": "Package", "Title": "cosmiq - COmbining Single Masses Into Quantities", "Version": "1.47.0", "Authors@R": "c(person(\"David\", \"Fischer\",\nemail = \"dajofischer@googlemail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Christian\", \"Panse\",\nemail = \"cp@fgcz.ethz.ch\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1975-3064\")),\nperson(\"Endre\", \"Laczko\",\nemail = \"cp@fgcz.ethz.ch\",\nrole = c(\"ctb\")))", "Description": "cosmiq is a tool for the preprocessing of liquid- or gas -\nchromatography mass spectrometry (LCMS/GCMS) data with a focus\non metabolomics or lipidomics applications. To improve the\ndetection of low abundant signals, cosmiq generates master maps\nof the mZ/RT space from all acquired runs before a peak\ndetection algorithm is applied. The result is a more robust\nidentification and quantification of low-intensity MS signals\ncompared to conventional approaches where peak picking is\nperformed in each LCMS/GCMS file separately. The cosmiq package\nbuilds on the xcmsSet object structure and can be therefore\nintegrated well with the package xcms as an alternative\npreprocessing step.", "License": "GPL-3", "URL": "http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html", "Collate": "combine_spectra.R peakdetection.R eicmatrix.R retention_time.R\nquantify_combined.R create_datamatrix.R cosmiq.R", "biocViews": "ImmunoOncology, MassSpectrometry, Metabolomics", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libnetcdf-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:39:13 UTC", "RemoteUrl": "https://github.com/bioc/cosmiq", "RemoteRef": "HEAD", "RemoteSha": "e00bfb810b8421ec33b86d1b43a522f39551d020", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 09:45:46 UTC", "User": "root" }, "Author": "David Fischer [aut, cre],\nChristian Panse [aut] (ORCID: ),\nEndre Laczko [ctb]", "Maintainer": "David Fischer ", 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