{
  "_id": "6a1adbd21d7bb097a09e91a8",
  "Package": "clusterProfiler",
  "Type": "Package",
  "Title": "A Universal Enrichment Tool for Interpreting Omics Data",
  "Version": "4.21.0",
  "Authors@R": "c(\nperson(given = \"Guangchuang\", family = \"Yu\",        email = \"guangchuangyu@gmail.com\",   role  = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-6485-8781\")),\nperson(given = \"Li-Gen\",      family = \"Wang\",      email = \"reeganwang020@gmail.com\",   role  = \"ctb\"),\nperson(given = \"Xiao\",        family = \"Luo\",       email = \"l77880853349@163.com\",      role  = \"ctb\"),\nperson(given = \"Meijun\",      family = \"Chen\",      email = \"mjchen1996@outlook.com\",    role  = \"ctb\"),\nperson(given = \"Giovanni\",    family = \"Dall'Olio\", email = \"giovanni.dallolio@upf.edu\", role = \"ctb\"),\nperson(given = \"Wanqian\",     family = \"Wei\",       email = \"altair_wei@outlook.com\",    role = \"ctb\"),\nperson(given = \"Chun-Hui\",    family = \"Gao\",       email = \"gaospecial@gmail.com\",      role = \"ctb\", comment = c(ORCID = \"0000-0002-1445-7939\"))\n)",
  "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
  "Description": "A universal tool for interpreting functional\ncharacteristics of omics data. It supports Over-Representation\nAnalysis (ORA) and Gene Set Enrichment Analysis (GSEA) for both\ncoding and non-coding genomics data of thousands of species. It\nprovides a unified and tidy interface to access, manipulate,\nand visualize enrichment results. A key capability is the\nsimultaneous analysis and comparison of datasets from multiple\ntreatments or time points. Furthermore, it integrates Large\nLanguage Model (LLM) capabilities to provide automated and\ninsightful interpretation of enrichment results.",
  "VignetteBuilder": "quarto",
  "ByteCompile": "true",
  "License": "Artistic-2.0",
  "URL": "https://yulab-smu.top/contribution-knowledge-mining/",
  "BugReports": "https://github.com/YuLab-SMU/clusterProfiler/issues",
  "Packaged": {
    "Date": "2026-05-30 08:57:32 UTC",
    "User": "root"
  },
  "biocViews": "Annotation, Clustering, GeneSetEnrichment, GO, KEGG,\nMultipleComparison, Pathways, Reactome, Visualization",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:12 UTC",
  "RemoteUrl": "https://github.com/bioc/clusterProfiler",
  "RemoteRef": "HEAD",
  "RemoteSha": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
  "NeedsCompilation": "no",
  "Author": "Guangchuang Yu [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-6485-8781>),\nLi-Gen Wang [ctb],\nXiao Luo [ctb],\nMeijun Chen [ctb],\nGiovanni Dall'Olio [ctb],\nWanqian Wei [ctb],\nChun-Hui Gao [ctb] (ORCID: <https://orcid.org/0000-0002-1445-7939>)",
  "MD5sum": "5fd1f870b6acfb6b2416e11e3436a022",
  "_user": "bioc",
  "_type": "src",
  "_file": "clusterProfiler_4.21.0.tar.gz",
  "_fileid": "33ef33f11eea0ad04a4680b502e220189ab119edce78cd1f89e0c95a1e0ef5d7",
  "_filesize": 580254,
  "_sha256": "33ef33f11eea0ad04a4680b502e220189ab119edce78cd1f89e0c95a1e0ef5d7",
  "_created": "2026-05-30T08:57:32.000Z",
  "_published": "2026-05-30T12:45:06.458Z",
  "_jobs": [
    {
      "job": 78638122149,
      "time": 215,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7307024622"
    },
    {
      "job": 78638122162,
      "time": 367,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7307039753"
    },
    {
      "job": 78638122158,
      "time": 325,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307035768"
    },
    {
      "job": 78638122152,
      "time": 278,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7308269346"
    },
    {
      "job": 78638122168,
      "time": 263,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7308268572"
    },
    {
      "job": 78637877604,
      "time": 286,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307001891"
    },
    {
      "job": 78638122134,
      "time": 175,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307020503"
    },
    {
      "job": 78638122159,
      "time": 612,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7307063990"
    },
    {
      "job": 78638122169,
      "time": 655,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7307067788"
    },
    {
      "job": 78638122156,
      "time": 307,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307033980"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 5,
    "note": 15
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/clusterProfiler",
  "_commit": {
    "id": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379712
  },
  "_maintainer": {
    "name": "Guangchuang Yu",
    "email": "guangchuangyu@gmail.com",
    "login": "guangchuangyu",
    "twitter": "@guangchuangyu",
    "description": "Professor of Bioinformatics at Southern Medical University.",
    "uuid": 626539,
    "orcid": "0000-0002-6485-8781"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "aisdk",
      "role": "Imports"
    },
    {
      "package": "AnnotationDbi",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "enrichit",
      "version": ">= 0.1.1",
      "role": "Imports"
    },
    {
      "package": "enrichplot",
      "version": ">= 1.9.3",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "GO.db",
      "role": "Imports"
    },
    {
      "package": "GOSemSim",
      "version": ">= 2.27.2",
      "role": "Imports"
    },
    {
      "package": "gson",
      "version": ">= 0.0.7",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "qvalue",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "yulab.utils",
      "version": ">= 0.2.3",
      "role": "Imports"
    },
    {
      "package": "AnnotationHub",
      "role": "Suggests"
    },
    {
      "package": "BiocManager",
      "role": "Suggests"
    },
    {
      "package": "DOSE",
      "role": "Suggests"
    },
    {
      "package": "ggtangle",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 47,
  "_updates": [
    {
      "week": "2025-43",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 4
    },
    {
      "week": "2025-47",
      "n": 3
    },
    {
      "week": "2025-49",
      "n": 1
    },
    {
      "week": "2025-50",
      "n": 3
    },
    {
      "week": "2025-51",
      "n": 7
    },
    {
      "week": "2025-52",
      "n": 1
    },
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-03",
      "n": 2
    },
    {
      "week": "2026-04",
      "n": 13
    },
    {
      "week": "2026-06",
      "n": 3
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "4.21.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "4.20.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "clustering",
    "genesetenrichment",
    "go",
    "kegg",
    "multiplecomparison",
    "pathways",
    "reactome",
    "visualization",
    "enrichment-analysis",
    "gsea",
    "quarto"
  ],
  "_stars": 1208,
  "_contributors": [
    {
      "user": "guangchuangyu",
      "count": 746,
      "uuid": 626539
    },
    {
      "user": "huerqiang",
      "count": 57,
      "uuid": 48857018
    },
    {
      "user": "jigyasa-g",
      "count": 46,
      "uuid": 75614134
    },
    {
      "user": "dtenenba",
      "count": 26,
      "uuid": 2286826
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "dalloliogm",
      "count": 14,
      "uuid": 14500
    },
    {
      "user": "altairwei",
      "count": 10,
      "uuid": 30854075
    },
    {
      "user": "clearmind777",
      "count": 10,
      "uuid": 139222736
    },
    {
      "user": "778055611",
      "count": 9,
      "uuid": 93114976
    },
    {
      "user": "xiayh17",
      "count": 9,
      "uuid": 17431830
    },
    {
      "user": "xiangpin",
      "count": 8,
      "uuid": 17870644
    },
    {
      "user": "gaospecial",
      "count": 6,
      "uuid": 107597
    },
    {
      "user": "nelson-gon",
      "count": 6,
      "uuid": 42792514
    },
    {
      "user": "gregkoytiger",
      "count": 3,
      "uuid": 15109034
    },
    {
      "user": "alexanderpico",
      "count": 3,
      "uuid": 1418193
    },
    {
      "user": "gwangjinkim",
      "count": 2,
      "uuid": 32566039
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "mjchen1996",
      "count": 2,
      "uuid": 49385763
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "amcdavid",
      "count": 1,
      "uuid": 1486878
    },
    {
      "user": "kevinrue",
      "count": 1,
      "uuid": 5769108
    },
    {
      "user": "pshannon-bioc",
      "count": 1,
      "uuid": 2285629
    },
    {
      "user": "sonali-bioc",
      "count": 1,
      "uuid": 6373953
    },
    {
      "user": "ryuzheng",
      "count": 1,
      "uuid": 5512323
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 41851,
    "source": "https://www.bioconductor.org/packages/stats/bioc/clusterProfiler"
  },
  "_mentions": 2223,
  "_devurl": "https://github.com/yulab-smu/clusterprofiler",
  "_searchresults": 16320,
  "_quarto": true,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/clusterProfiler.html",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yulab-smu/clusterprofiler",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "%<>%",
    "%>%",
    "append_kegg_category",
    "arrange",
    "bitr",
    "bitr_kegg",
    "browseKEGG",
    "buildGOmap",
    "cnetplot",
    "compareCluster",
    "dotplot",
    "download_KEGG",
    "dropGO",
    "emapplot",
    "enrichDAVID",
    "enricher",
    "enrichGO",
    "enrichKEGG",
    "enrichMKEGG",
    "enrichPC",
    "enrichWP",
    "filter",
    "geneID",
    "geneInCategory",
    "get_organism",
    "get_wp_organisms",
    "getPPI",
    "getTaxID",
    "getTaxInfo",
    "Gff2GeneTable",
    "go2ont",
    "go2term",
    "gofilter",
    "goplot",
    "group_by",
    "groupGO",
    "GSEA",
    "gseaplot",
    "gseGO",
    "gseKEGG",
    "gseMKEGG",
    "gsePC",
    "gseWP",
    "gsfilter",
    "gson_GO",
    "gson_GO_local",
    "gson_KEGG",
    "gson_KEGG_mapper",
    "gson_WP",
    "heatplot",
    "idType",
    "interpret",
    "interpret_agent",
    "interpret_hierarchical",
    "ko2name",
    "merge_result",
    "mutate",
    "n",
    "plotGOgraph",
    "read.blast2go",
    "read.gaf",
    "read.gmt",
    "read.gmt.pc",
    "read.gmt.wp",
    "rename",
    "ridgeplot",
    "search_kegg_organism",
    "select",
    "setReadable",
    "simplify",
    "slice",
    "summarise",
    "uniprot_get"
  ],
  "_datasets": [
    {
      "name": "DE_GSE8057",
      "title": "Datasets gcSample contains a sample of gene clusters.",
      "object": "DE_GSE8057",
      "file": "DE_GSE8057.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Gene",
        "time",
        "treatment"
      ],
      "rows": 1251,
      "table": true,
      "tojson": true
    },
    {
      "name": "gcSample",
      "title": "Datasets gcSample contains a sample of gene clusters.",
      "object": "gcSample",
      "file": "gcSample.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "append_kegg_category",
      "title": "append_kegg_category",
      "topics": [
        "append_kegg_category"
      ]
    },
    {
      "page": "bitr",
      "title": "bitr",
      "topics": [
        "bitr"
      ]
    },
    {
      "page": "bitr_kegg",
      "title": "bitr_kegg",
      "topics": [
        "bitr_kegg"
      ]
    },
    {
      "page": "browseKEGG",
      "title": "browseKEGG",
      "topics": [
        "browseKEGG"
      ]
    },
    {
      "page": "compareCluster",
      "title": "Compare gene clusters functional profile",
      "topics": [
        "compareCluster"
      ]
    },
    {
      "page": "DataSet",
      "title": "Datasets gcSample contains a sample of gene clusters.",
      "topics": [
        "DataSet",
        "DE_GSE8057",
        "gcSample",
        "kegg_category",
        "kegg_species"
      ]
    },
    {
      "page": "download_KEGG",
      "title": "download_KEGG",
      "topics": [
        "download_KEGG"
      ]
    },
    {
      "page": "dropGO",
      "title": "dropGO",
      "topics": [
        "dropGO"
      ]
    },
    {
      "page": "enrichDAVID",
      "title": "enrichDAVID",
      "topics": [
        "enrichDAVID"
      ]
    },
    {
      "page": "enricher",
      "title": "enricher",
      "topics": [
        "enricher"
      ]
    },
    {
      "page": "enrichGO",
      "title": "GO Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment GO categories after FDR control.",
      "topics": [
        "enrichGO"
      ]
    },
    {
      "page": "enrichKEGG",
      "title": "KEGG Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG categories with FDR control.",
      "topics": [
        "enrichKEGG"
      ]
    },
    {
      "page": "enrichMKEGG",
      "title": "KEGG Module Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG Module categories with FDR control.",
      "topics": [
        "enrichMKEGG"
      ]
    },
    {
      "page": "enrichPC",
      "title": "enrichPC",
      "topics": [
        "enrichPC"
      ]
    },
    {
      "page": "enrichWP",
      "title": "enrichWP",
      "topics": [
        "enrichWP"
      ]
    },
    {
      "page": "get_wp_organisms",
      "title": "get_wp_organism",
      "topics": [
        "get_wp_organisms"
      ]
    },
    {
      "page": "getPPI",
      "title": "getPPI",
      "topics": [
        "getPPI"
      ]
    },
    {
      "page": "getTaxID",
      "title": "getTaxID",
      "topics": [
        "getTaxID"
      ]
    },
    {
      "page": "getTaxInfo",
      "title": "getTaxInfo",
      "topics": [
        "getTaxInfo"
      ]
    },
    {
      "page": "Gff2GeneTable",
      "title": "Gff2GeneTable",
      "topics": [
        "Gff2GeneTable"
      ]
    },
    {
      "page": "go2ont",
      "title": "go2ont",
      "topics": [
        "go2ont"
      ]
    },
    {
      "page": "go2term",
      "title": "go2term",
      "topics": [
        "go2term"
      ]
    },
    {
      "page": "gofilter",
      "title": "gofilter",
      "topics": [
        "gofilter"
      ]
    },
    {
      "page": "groupGO",
      "title": "Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.",
      "topics": [
        "groupGO"
      ]
    },
    {
      "page": "groupGOResult-class",
      "title": "Class \"groupGOResult\" This class represents the result of functional Profiles of a set of gene at specific GO level.",
      "topics": [
        "groupGOResult-class",
        "show,groupGOResult-method"
      ]
    },
    {
      "page": "GSEA",
      "title": "GSEA",
      "topics": [
        "GSEA"
      ]
    },
    {
      "page": "gseGO",
      "title": "gseGO",
      "topics": [
        "gseGO"
      ]
    },
    {
      "page": "gseKEGG",
      "title": "gseKEGG",
      "topics": [
        "gseKEGG"
      ]
    },
    {
      "page": "gseMKEGG",
      "title": "gseMKEGG",
      "topics": [
        "gseMKEGG"
      ]
    },
    {
      "page": "gsePC",
      "title": "gsePC",
      "topics": [
        "gsePC"
      ]
    },
    {
      "page": "gseWP",
      "title": "gseWP",
      "topics": [
        "gseWP"
      ]
    },
    {
      "page": "gson_GO",
      "title": "gson_KEGG",
      "topics": [
        "gson_GO"
      ]
    },
    {
      "page": "gson_GO_local",
      "title": "Build a gson object that annotate Gene Ontology",
      "topics": [
        "gson_GO_local"
      ]
    },
    {
      "page": "gson_KEGG",
      "title": "gson_KEGG",
      "topics": [
        "gson_KEGG"
      ]
    },
    {
      "page": "gson_KEGG_mapper",
      "title": "Build KEGG annotation for novel species using KEGG Mapper",
      "topics": [
        "gson_KEGG_mapper"
      ]
    },
    {
      "page": "gson_WP",
      "title": "gson_WP",
      "topics": [
        "gson_WP"
      ]
    },
    {
      "page": "idType",
      "title": "idType",
      "topics": [
        "idType"
      ]
    },
    {
      "page": "interpret",
      "title": "Interpret Enrichment Results Using LLMs",
      "topics": [
        "interpret"
      ]
    },
    {
      "page": "interpret_agent",
      "title": "Interpret enrichment results using a multi-agent pipeline (Deep Mode)",
      "topics": [
        "interpret_agent"
      ]
    },
    {
      "page": "interpret_hierarchical",
      "title": "Interpret enrichment results using a hierarchical strategy",
      "topics": [
        "interpret_hierarchical"
      ]
    },
    {
      "page": "ko2name",
      "title": "ko2name",
      "topics": [
        "ko2name"
      ]
    },
    {
      "page": "merge_result",
      "title": "merge_result",
      "topics": [
        "merge_result"
      ]
    },
    {
      "page": "plot.interpretation",
      "title": "plot",
      "topics": [
        "plot.interpretation"
      ]
    },
    {
      "page": "plotGOgraph",
      "title": "plotGOgraph",
      "topics": [
        "plotGOgraph"
      ]
    },
    {
      "page": "read.gmt.pc",
      "title": "read.gmt.pc",
      "topics": [
        "read.gmt.pc"
      ]
    },
    {
      "page": "search_kegg_organism",
      "title": "search_kegg_organism",
      "topics": [
        "search_kegg_organism"
      ]
    },
    {
      "page": "simplify-methods",
      "title": "simplify method",
      "topics": [
        "simplify",
        "simplify,compareClusterResult-method",
        "simplify,enrichResult-method",
        "simplify,gseaResult-method"
      ]
    },
    {
      "page": "uniprot_get",
      "title": "uniprot_get",
      "topics": [
        "uniprot_get"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/clusterProfiler/raw/HEAD/README.md",
  "_rundeps": [
    "aisdk",
    "AnnotationDbi",
    "ape",
    "aplot",
    "askpass",
    "base64enc",
    "Biobase",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "bslib",
    "cachem",
    "callr",
    "cli",
    "cluster",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "digest",
    "DOSE",
    "dplyr",
    "enrichit",
    "enrichplot",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "fs",
    "gdtools",
    "generics",
    "ggforce",
    "ggfun",
    "ggiraph",
    "ggnewscale",
    "ggplot2",
    "ggplotify",
    "ggrepel",
    "ggtangle",
    "ggtree",
    "glue",
    "GO.db",
    "GOSemSim",
    "gridGraphics",
    "gson",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "igraph",
    "IRanges",
    "isoband",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "knitr",
    "labeling",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "nlme",
    "openssl",
    "patchwork",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "polyclip",
    "processx",
    "ps",
    "purrr",
    "qvalue",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "reshape2",
    "rlang",
    "rmarkdown",
    "RSQLite",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "scatterpie",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "systemfonts",
    "tibble",
    "tidydr",
    "tidyr",
    "tidyselect",
    "tidytree",
    "tinytex",
    "treeio",
    "tweenr",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XVector",
    "yaml",
    "yulab.utils"
  ],
  "_vignettes": [
    {
      "source": "clusterProfiler.qmd",
      "filename": "clusterProfiler.html",
      "title": "Statistical analysis and visualization of functional profiles for genes and gene clusters",
      "engine": "quarto::html",
      "headings": [],
      "created": "2025-11-20 03:22:51",
      "modified": "2025-11-20 03:22:51",
      "commits": 1
    }
  ],
  "_score": 17.349013269674156,
  "_indexed": true,
  "_nocasepkg": "clusterprofiler",
  "_universes": [
    "bioc",
    "guangchuangyu",
    "yulab-smu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "4.21.0",
      "date": "2026-05-30T09:01:27.000Z",
      "distro": "noble",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "7bc48a778264121b1b2dbcde6968cbc497ccff5a2e3d405dc91ae92e8f2c9313",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "4.21.0",
      "date": "2026-05-30T09:00:57.000Z",
      "distro": "noble",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "f797ae85fd8fd63bdb705ffd4458e5d5515761e7b5f96a2226fc3a6950a8e937",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "4.21.0",
      "date": "2026-05-30T12:42:09.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "96ffc6222f8e6503d04ce86b63bbed566ebb55c478b7305b201719549f74fb6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "4.21.0",
      "date": "2026-05-30T12:42:21.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "5599dfa2dfdd08a46bf9461a260db4d64180721aecdea9f574aba390f1c56006",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "4.21.0",
      "date": "2026-05-30T09:00:58.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "fceedf9ab78d1c0e3818146352e080595dc6d9b37c4b48ba31b864a84247af70",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "4.21.0",
      "date": "2026-05-30T09:05:22.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "24a65ec8a59095d7186db6900eabbe6b170ab4025fbfeed91e99777c7768aad1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "4.21.0",
      "date": "2026-05-30T09:05:59.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "eb1a611081585d91f371c612adc96f97f830ead5af4fd60aff616b5cadd7cca6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "4.21.0",
      "date": "2026-05-30T09:00:09.000Z",
      "commit": "400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b",
      "fileid": "d3a48e2e7237b8398f4f6a3e7094499c3403b7ef0f2ee9ca48649c78205768e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679713614"
    }
  ]
}