{ "_id": "6a1ad7551d7bb097a09e62d9", "Package": "clustComp", "Version": "1.41.0", "Date": "2017-07-16", "Title": "Clustering Comparison Package", "Author": "Aurora Torrente and Alvis Brazma.", "Maintainer": "Aurora Torrente ", "biocViews": "GeneExpression, Clustering, Visualization", "Description": "clustComp is a package that implements several techniques\nfor the comparison and visualisation of relationships between\ndifferent clustering results, either flat versus flat or\nhierarchical versus flat. These relationships among clusters\nare displayed using a weighted bi-graph, in which the nodes\nrepresent the clusters and the edges connect pairs of nodes\nwith non-empty intersection; the weight of each edge is the\nnumber of elements in that intersection and is displayed\nthrough the edge thickness. The best layout of the bi-graph is\nprovided by the barycentre algorithm, which minimises the\nweighted number of crossings. In the case of comparing a\nhierarchical and a non-hierarchical clustering, the dendrogram\nis pruned at different heights, selected by exploring the tree\nby depth-first search, starting at the root. Branches are\ndecided to be split according to the value of a scoring\nfunction, that can be based either on the aesthetics of the\nbi-graph or on the mutual information between the hierarchical\nand the flat clusterings. A mapping between groups of clusters\nfrom each side is constructed with a greedy algorithm, and can\nbe additionally visualised.", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:42:39 UTC", "RemoteUrl": "https://github.com/bioc/clustComp", "RemoteRef": "HEAD", "RemoteSha": "b2bace84baf05f868916f966ada400ebc41376ba", "Packaged": { "Date": "2026-05-30 08:53:17 UTC", "User": "root" }, "MD5sum": "8846e22b4385bd0a77d85cf5567f08a6", "_user": "bioc", "_type": "src", "_file": "clustComp_1.41.0.tar.gz", "_fileid": "58c8a8a87b962e2e69a2ef8369c70a3a1eb74fb1647441a7862370bbfa1fa72b", "_filesize": 171071, "_sha256": "58c8a8a87b962e2e69a2ef8369c70a3a1eb74fb1647441a7862370bbfa1fa72b", "_created": "2026-05-30T08:53:17.000Z", "_published": "2026-05-30T12:25:57.689Z", "_jobs": [ { "job": 78637888020, "time": 141, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306987927" }, { "job": 78637888019, 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"time": 69, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7306980724" } ], "_bioccheck": { "error": 1, "warning": 2, "note": 9 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679677471", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/clustComp", "_commit": { "id": "b2bace84baf05f868916f966ada400ebc41376ba", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380159 }, "_maintainer": { "name": "Aurora Torrente", "email": "aurora@ebi.ac.uk" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3", "role": "Depends" }, { "package": "sm", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "Biobase", "role": "Suggests" }, { "package": "colonCA", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "clustering", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 376, "source": "https://www.bioconductor.org/packages/stats/bioc/clustComp" }, "_mentions": 2, "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/clustComp.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], 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