{
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  "Package": "cellscape",
  "Title": "Explores single cell copy number profiles in the context of a\nsingle cell tree",
  "Version": "1.37.0",
  "Authors@R": "c(\nperson(\"Shixiang\", \"Wang\", , \"w_shixiang@163.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9855-7357\")),\nperson(\"Maia\", \"Smith\", , \"maiaannesmith@gmail.com\", role = \"aut\")\n)",
  "Description": "CellScape facilitates interactive browsing of single cell\nclonal evolution datasets. The tool requires two main inputs:\n(i) the genomic content of each single cell in the form of\neither copy number segments or targeted mutation values, and\n(ii) a single cell phylogeny. Phylogenetic formats can vary\nfrom dendrogram-like phylogenies with leaf nodes to\nevolutionary model-derived phylogenies with observed or latent\ninternal nodes. The CellScape phylogeny is flexibly input as a\ntable of source-target edges to support arbitrary\nrepresentations, where each node may or may not have associated\ngenomic data. The output of CellScape is an interactive\ninterface displaying a single cell phylogeny and a\ncell-by-locus genomic heatmap representing the mutation status\nin each cell for each locus.",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "biocViews": "Visualization",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:45:09 UTC",
  "RemoteUrl": "https://github.com/bioc/cellscape",
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    "User": "root"
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  "Author": "Shixiang Wang [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9855-7357>),\nMaia Smith [aut]",
  "Maintainer": "Shixiang Wang <w_shixiang@163.com>",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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    "login": "shixiangwang",
    "orcid": "0000-0001-9855-7357",
    "twitter": "@WangShxiang",
    "description": "形每万变，神唯守一。",
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  "_usedby": 0,
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    "name": "Bioconductor",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_realowner": "bioc",
  "_cranurl": false,
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    "checkCloneColours",
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      "page": "cellscape",
      "title": "CellScape",
      "topics": [
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      "title": "Get depth first search of a tree",
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        "checkGtypePositioning",
        "checkMinDims",
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        "Examples",
        "Required parameters",
        "Parameters that are optional for CellScape, but required for a TimeScape",
        "Optional parameters",
        "Clone colours",
        "Mutation order",
        "Titles",
        "Interactivity",
        "Obtaining the data",
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        "Copy number data:",
        "Clonal composition data:",
        "Documentation",
        "References"
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      "created": "2017-02-11 19:22:18",
      "modified": "2024-01-21 11:08:34",
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