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"page": "plotMarkerHeatmap", "title": "Generate heatmap for a marker decision tree", "topics": [ "plotMarkerHeatmap" ] }, { "page": "plotRPC", "title": "Visualize perplexity differences of a list of celda models", "topics": [ "plotRPC", "plotRPC,celdaList-method", "plotRPC,SingleCellExperiment-method" ] }, { "page": "recodeClusterY", "title": "Recode feature module labels", "topics": [ "recodeClusterY" ] }, { "page": "recodeClusterZ", "title": "Recode cell cluster labels", "topics": [ "recodeClusterZ" ] }, { "page": "recursiveSplitCell", "title": "Recursive cell splitting", "topics": [ "recursiveSplitCell", "recursiveSplitCell,matrix-method", "recursiveSplitCell,SingleCellExperiment-method" ] }, { "page": "recursiveSplitModule", "title": "Recursive module splitting", "topics": [ "recursiveSplitModule", "recursiveSplitModule,matrix-method", "recursiveSplitModule,SingleCellExperiment-method" ] }, { "page": "reorderCelda", "title": "Reorder cells populations and/or features modules using hierarchical clustering", "topics": [ "reorderCelda", "reorderCelda,matrix,celda_C-method", "reorderCelda,matrix,celda_CG-method", "reorderCelda,matrix,celda_G-method", "reorderCelda,SingleCellExperiment,ANY-method" ] }, { "page": "reportceldaCG", "title": "Generate an HTML report for celda_CG", "topics": [ "reportceldaCG", "reportCeldaCGPlotResults", "reportCeldaCGRun" ] }, { "page": "resamplePerplexity", "title": "Calculate and visualize perplexity of all models in a celdaList", "topics": [ "resamplePerplexity", "resamplePerplexity,ANY-method", "resamplePerplexity,SingleCellExperiment-method" ] }, { "page": "resList", "title": "Get final celdaModels from a celda model 'SCE' or celdaList object", "topics": [ "resList", "resList,celdaList-method", "resList,SingleCellExperiment-method" ] }, { "page": "retrieveFeatureIndex", "title": "Retrieve row index for a set of features", "topics": [ "retrieveFeatureIndex" ] }, { "page": "runParams", "title": "Get run parameters from a celda model 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