{ "_id": "6a1965cbacfb0bcc41de6fb4", "Type": "Package", "Package": "ceRNAnetsim", "Title": "Regulation Simulator of Interaction between miRNA and Competing\nRNAs (ceRNA)", "Version": "1.25.0", "Authors@R": "c(person(given = \"Selcen\",\nfamily = \"Ari Yuka\",\nrole = c(\"aut\", \"cre\"),\nemail = \"selcenarii@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0028-2453\")),\nperson(given = \"Alper\",\nfamily = \"Yilmaz\",\nrole = \"aut\",\nemail = \"alperyilmaz@gmail.com\",\ncomment = c(ORCID = \"0000-0002-8827-4887\")))", "Description": "This package simulates regulations of ceRNA (Competing\nEndogenous) expression levels after a expression level change\nin one or more miRNA/mRNAs. The methodolgy adopted by the\npackage has potential to incorparate any ceRNA (circRNA,\nlincRNA, etc.) into miRNA:target interaction network. The\npackage basically distributes miRNA expression over available\nceRNAs where each ceRNA attracks miRNAs proportional to its\namount. But, the package can utilize multiple parameters that\nmodify miRNA effect on its target (seed type, binding energy,\nbinding location, etc.). The functions handle the given\ndataset as graph object and the processes progress via edge and\nnode variables.", "License": "GPL (>= 3.0)", "URL": "https://github.com/selcenari/ceRNAnetsim", "BugReports": "https://github.com/selcenari/ceRNAnetsim/issues", "VignetteBuilder": "knitr", "biocViews": "NetworkInference, SystemsBiology, Network, GraphAndNetwork,\nTranscriptomics", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "7.1.2", "Config/pak/sysreqs": "libfontconfig1-dev libfreetype6-dev libglpk-dev\nlibicu-dev libxml2-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:51:27 UTC", "RemoteUrl": "https://github.com/bioc/ceRNAnetsim", "RemoteRef": "HEAD", "RemoteSha": "578c191f426e7e221568e3af65b233c828348862", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 08:25:30 UTC", "User": "root" }, "Author": "Selcen Ari Yuka [aut, cre] (ORCID:\n),\nAlper Yilmaz [aut] (ORCID: )", "Maintainer": "Selcen Ari Yuka ", "MD5sum": 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