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  "Description": "Methods to infer clonal tree configuration for a\npopulation of cells using single-cell RNA-seq data (scRNA-seq),\nand possibly other data modalities. Methods are also provided\nto assign cells to inferred clones and explore differences in\ngene expression between clones. These methods can flexibly\nintegrate information from imperfect clonal trees inferred\nbased on bulk exome-seq data, and sparse variant alleles\nexpressed in scRNA-seq data. A flexible beta-binomial error\nmodel that accounts for stochastic dropout events as well as\nsystematic allelic imbalance is used.",
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