{
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  "Package": "blase",
  "Title": "Bulk Linkage Analysis for Single-cell Experiments",
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  "Authors@R": "c(\nperson(\"Andrew\", \"McCluskey\", , \"2117532m@student.gla.ac.uk\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0004-4187-799X\")),\nperson(\"Toby\", \"Kettlewell\", , , role = c(\"aut\"), comment = c(ORCID = \"0009-0001-1225-3318\")),\nperson(\"Adrian M.\", \"Smith\", , , role = c(\"aut\"), comment = c(ORCID=\"0000-0001-8833-2330\")),\nperson(\"Rhiannon\", \"Kundu\", , , role = c(\"aut\"), comment = c(ORCID=\"0000-0003-3970-5860\")),\nperson(\"David A.\", \"Gunn\", , , role = c(\"aut\"), comment = c(ORCID=\"0000-0001-9866-3221\")),\nperson(\"Thomas D.\", \"Otto\", , , role=c(\"aut\",\"ths\"), comment=c(ORCID = \"0000-0002-1246-7404\")))",
  "Description": "BLASE is a method for finding where bulk RNA-seq data lies\non a single-cell pseudotime trajectory. It uses a fast and\nunderstandable approach based on Spearman correlation, with\nbootstrapping to provide confidence. BLASE can be used to\n\"date\" bulk RNA-seq data, annotate cell types in scRNA-seq, and\nhelp correct for developmental phenotype differences in bulk\nRNA-seq experiments.",
  "License": "GPL (>= 3)",
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  "biocViews": "Transcriptomics, SingleCell, Sequencing, GeneExpression,\nTranscription, RNASeq, TimeCourse, CellBiology, Software,\nCellBasedAssays",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-07-14 08:30:54 UTC",
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  "Packaged": {
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    "User": "root"
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  "Author": "Andrew McCluskey [aut, cre] (ORCID:\n<https://orcid.org/0009-0004-4187-799X>),\nToby Kettlewell [aut] (ORCID: <https://orcid.org/0009-0001-1225-3318>),\nAdrian M. Smith [aut] (ORCID: <https://orcid.org/0000-0001-8833-2330>),\nRhiannon Kundu [aut] (ORCID: <https://orcid.org/0000-0003-3970-5860>),\nDavid A. Gunn [aut] (ORCID: <https://orcid.org/0000-0001-9866-3221>),\nThomas D. Otto [aut, ths] (ORCID:\n<https://orcid.org/0000-0002-1246-7404>)",
  "Maintainer": "Andrew McCluskey <2117532m@student.gla.ac.uk>",
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  "_created": "2026-07-14T09:44:06.000Z",
  "_published": "2026-07-14T09:55:29.341Z",
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      "object": "tradeSeq_BLASE_example_sce",
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        "BlaseData-class"
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      "title": "Get name of bulk of a BLASE Mapping Results object.",
      "concept": [
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      "title": "Set name of bulk of a BLASE Mapping Results object.",
      "concept": [
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        "bulk_name<-,MappingResult-method"
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      "title": "calculate_gene_peakedness",
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      "page": "evaluate_parameters",
      "title": "Evaluate n_bins and n_genes for bin mapping",
      "concept": [
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        "evaluate_parameters"
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      "title": "Evaluate Top Genes",
      "concept": [
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      "title": "Identify the Best Parameters For Your Dataset",
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      "title": "Gene Peakedness Spread Selection",
      "concept": [
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        "gene_peakedness_spread_selection"
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      "concept": [
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        "genes,BlaseData-method"
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        "genes<-,BlaseData-method"
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      "concept": [
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      "title": "Get the mapping history for a BLASE Mapping Results object.",
      "concept": [
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        "mapping_history,MappingResult-method"
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    {
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      "title": "Blase Mapping Result",
      "concept": [
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        "MappingResult",
        "MappingResult-class"
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      "title": "Malaria Cell Atlas Plasmodium falciparum for BLASE Vignette",
      "concept": [
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      "title": "Get the mapping history for a BLASE Mapping Results object.",
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      "title": "Painter 2018 Plasmodium falciparum 48h asexual lifecycle microarray data",
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