{
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  "Package": "biovizBase",
  "Version": "1.61.0",
  "Title": "Basic graphic utilities for visualization of genomic data.",
  "Description": "The biovizBase package is designed to provide a set of\nutilities, color schemes and conventions for genomic data. It\nserves as the base for various high-level packages for\nbiological data visualization. This saves development effort\nand encourages consistency.",
  "Authors@R": "c(person(\"Tengfei\", \"Yin\", role=c(\"aut\"),\nemail=\"yintengfei@gmail.com\"),\nperson(\"Michael\", \"Lawrence\", role=c(\"aut\", \"ths\", \"cre\"),\nemail=\"lawremi@gmail.com\"),\nperson(\"Dianne\", \"Cook\", role=c(\"aut\", \"ths\")),\nperson(\"Johannes\", \"Rainer\", role=\"ctb\"))",
  "License": "Artistic-2.0",
  "LazyLoad": "Yes",
  "LazyData": "Yes",
  "Collate": "utils.R color.R AllGenerics.R crunch-method.R mold-method.R\naddStepping-method.R getFragLength-method.R\nshrinkageFun-method.R maxGap-method.R spliceSummary-method.R\nideogram.R pileup.R coverage.R labs.R original.R transform.R\nfacets-method.R aes.R scale.R zzz.R biovizBase-package.R",
  "biocViews": "Infrastructure, Visualization, Preprocessing",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:52 UTC",
  "RemoteUrl": "https://github.com/bioc/biovizBase",
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  "Author": "Tengfei Yin [aut],\nMichael Lawrence [aut, ths, cre],\nDianne Cook [aut, ths],\nJohannes Rainer [ctb]",
  "Maintainer": "Michael Lawrence <lawremi@gmail.com>",
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        "biovizBase"
      ]
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        "genBlindPalInfo",
        "genBrewerBlindPalInfo",
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        "mut.gr"
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        "crunch,TxDb-method"
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        "getXScale,GRanges-method"
      ]
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        "getXLab,GAlignments-method",
        "getXLab,GRanges-method",
        "getXLab,GRangesList-method",
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        "getYLab",
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      ]
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      "title": "ideogram with cytoband information",
      "topics": [
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      "page": "isIdeogram",
      "title": "Ideogram checking",
      "topics": [
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    {
      "page": "isMatchedWithModel",
      "title": "Utils for Splicing Summary",
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      "title": "Simple ideogram checking",
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    {
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        "mold,GRangesList-method",
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        "mold,RangedSummarizedExperiment-method",
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        "mold,Seqinfo-method",
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      "title": "Summarize reads for certain region",
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      "title": "Show colors",
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    },
    {
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      "title": "Shrinkage function",
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        "shrinkageFun",
        "shrinkageFun,GenomicRanges-method",
        "shrinkageFun,IRanges-method"
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        "splitByFacets,GRanges,GRanges-method",
        "splitByFacets,GRanges,missing-method",
        "splitByFacets,GRanges,NULL-method"
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      "title": "Transform GRanges with New Coordinates",
      "topics": [
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    },
    {
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      "title": "Transform GRanges to different coordinates and layout",
      "topics": [
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        "transformDfToGr",
        "transformToArch",
        "transformToArch,GRanges-method",
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