{ "_id": "6aca168bfe5cc25786e848a2", "Package": "biotmleData", "Title": "Example experimental microarray data set for the \"biotmle\" R\npackage", "Version": "1.37.0", "Authors@R": "person(\"Nima\", \"Hejazi\", email = \"nhejazi@berkeley.edu\",\nrole = c(\"aut\", \"cre\"))", "Description": "Microarray data (from the Illumina Ref-8 BeadChips\nplatform) and phenotype-level data from an epidemiological\ninvestigation of benzene exposure, packaged using\n\"SummarizedExperiemnt\", for use as an example with the\n\"biotmle\" R package.", "License": "file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "6.0.1", "biocViews": "GeneExpression, DifferentialExpression, Sequencing,\nMicroarray, RNASeq", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:30:32 UTC", "RemoteUrl": "https://github.com/bioc/biotmleData", "RemoteRef": "HEAD", "RemoteSha": "a95c22d6f277bee27332400ca1bd8a918ca62148", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:37:35 UTC", "User": "root" }, "Author": "Nima Hejazi [aut, cre]", "Maintainer": "Nima Hejazi ", "_user": "bioc", "_type": "src", "_file": "biotmleData_1.37.0.tar.gz", "_fileid": "https://r2.ropensci.org/cd2e3a2b7a66127f117945793e4d4a210d1387e6fc7dd233f81f79dcde64e811", "_filesize": 32437147, "_sha256": "cd2e3a2b7a66127f117945793e4d4a210d1387e6fc7dd233f81f79dcde64e811", "_expires": "2027-01-18T10:42:16.000Z", "_created": "2026-10-10T10:37:35.000Z", "_published": "2026-10-10T10:42:19.276Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045387824", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 3, "note": 7 }, "_upstream": "https://github.com/bioc/biotmleData", "_commit": { "id": "a95c22d6f277bee27332400ca1bd8a918ca62148", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379432 }, "_maintainer": { "name": "Nima Hejazi", "email": "nhejazi@berkeley.edu", "login": "nhejazi", "bluesky": "@nimahejazi.org", "linkedin": "in/nshejazi", "description": "assistant professor of biostatistics at the harvard school of public health working on causal {inference, machine learning}", "uuid": 8527276 }, "_distro": "resolute", "_jobs": [ { "job": 114194471972, "time": 125, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11667059330" }, { "job": 114194471994, "time": 176, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11667304005" }, { "job": 114194471943, "time": 171, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11667323960" }, { "job": 114193802772, "time": 236, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667443376" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Biobase", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.37.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.36.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "geneexpression", "differentialexpression", "sequencing", "microarray", "rnaseq", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 17, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/biotmleData.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "biomarkerTMLEout", "title": "Results obtained from running biomarkertmle on the \"illuminaData\" sample data", "object": "biomarkertmleOut", "class": [ "bioTMLE" ], "fields": [], "table": false, "tojson": false }, { "name": "illuminaData", "title": "Sample baseline covariates and Illumina microarray data from a 2007 study", "object": "illuminaData", "class": [ "SummarizedExperiment" ], "fields": [], "table": false, "tojson": false }, { "name": "rnaseqTMLEout", "title": "Results obtained from running biomarkertmle on simulated RNA-Seq data", "object": "rnaseqtmleOut", "class": [ "bioTMLE" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "biomarkerTMLEout", "title": "Results obtained from running biomarkertmle on the \"illuminaData\" sample data", "topics": [ "biomarkerTMLEout" ] }, { "page": "illuminaData", "title": "Sample baseline covariates and Illumina microarray data from a 2007 study", "topics": [ "illuminaData" ] }, { "page": "rnaseqTMLEout", "title": "Results obtained from running biomarkertmle on simulated RNA-Seq data", "topics": [ "rnaseqTMLEout" ] } ], "_readme": "https://github.com/bioc/biotmleData/raw/HEAD/README.md", "_rundeps": [], "_score": 3.230448921378274, "_indexed": true, "_nocasepkg": "biotmledata", "_universes": [ "bioc", "nhejazi" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.37.0", "date": "2026-10-10T10:41:05.000Z", "distro": "resolute", "commit": "a95c22d6f277bee27332400ca1bd8a918ca62148", "fileid": "https://r2.ropensci.org/91529daa267c45a072079ed58131d384cf9a0dafe58484d271d68d9439e787b9", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045387824" }, { "r": "4.6.1", "os": "linux", "version": "1.37.0", "date": "2026-10-10T10:41:07.000Z", "distro": "resolute", "commit": "a95c22d6f277bee27332400ca1bd8a918ca62148", "fileid": "https://r2.ropensci.org/abe9cd9ff6dbbc4bfa0df4a831cbfc344d81f25398eb13d52d3c929736e22ea8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045387824" } ] }