{
  "_id": "6a4981286d67900babdf7900",
  "Package": "biocroxytest",
  "Title": "Handle Long Tests in Bioconductor Packages",
  "Version": "1.9.0",
  "Authors@R": "c(person(given = \"Francesc\",\nfamily = \"Catala-Moll\",\nrole = c(\"aut\", \"cre\"),\nemail = \"fcatala@irsicaixa.es\",\ncomment = c(ORCID = \"0000-0002-2354-8648\"))\n)",
  "Description": "This package provides a roclet for roxygen2 that\nidentifies and processes code blocks in your documentation\nmarked with `@longtests`. These blocks should contain tests\nthat take a long time to run and thus cannot be included in the\nregular test suite of the package. When you run\n`roxygen2::roxygenise` with the `longtests_roclet`, it will\nextract these long tests from your documentation and save them\nin a separate directory. This allows you to run these long\ntests separately from the rest of your tests, for example, on a\ncontinuous integration server that is set up to run long tests.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE, roclets = c(\"rd\", \"collate\",\n\"namespace\"))",
  "RoxygenNote": "7.3.0",
  "URL": "https://github.com/xec-cm/biocroxytest",
  "BugReports": "https://github.com/xec-cm/biocroxytest/issues",
  "biocViews": "Software, Infrastructure",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "false",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:02:17 UTC",
  "RemoteUrl": "https://github.com/bioc/biocroxytest",
  "RemoteRef": "HEAD",
  "RemoteSha": "d5876a7a5aa55e70f05109335a2b464870e885bc",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 21:51:05 UTC",
    "User": "root"
  },
  "Author": "Francesc Catala-Moll [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2354-8648>)",
  "Maintainer": "Francesc Catala-Moll <fcatala@irsicaixa.es>",
  "_user": "bioc",
  "_type": "src",
  "_file": "biocroxytest_1.9.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/8174a4d069631ed8f67518c9c33b70ed14c325163ce92dd574e2c76fb709d3f5",
  "_filesize": 2700865,
  "_sha256": "8174a4d069631ed8f67518c9c33b70ed14c325163ce92dd574e2c76fb709d3f5",
  "_expires": "2026-10-12T21:54:46.000Z",
  "_created": "2026-07-04T21:51:05.000Z",
  "_published": "2026-07-04T21:54:48.498Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 6
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580",
  "_status": "success",
  "_upstream": "https://github.com/bioc/biocroxytest",
  "_commit": {
    "id": "d5876a7a5aa55e70f05109335a2b464870e885bc",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381337
  },
  "_maintainer": {
    "name": "Francesc Catala-Moll",
    "email": "fcatala@irsicaixa.es",
    "login": "xec-cm",
    "linkedin": "in/francesc-català-moll-11342485",
    "twitter": "@fcatalamoll",
    "description": "Computational Biologist & Data Manager at @MicrobialGenomics-IrsicaixaOrg",
    "uuid": 70643921,
    "orcid": "0000-0002-2354-8648"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85169856162,
      "time": 155,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8085752305"
    },
    {
      "job": 85169856141,
      "time": 194,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8085756384"
    },
    {
      "job": 85169856169,
      "time": 167,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8085753535"
    },
    {
      "job": 85169856152,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8085744466"
    },
    {
      "job": 85169856147,
      "time": 70,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8085742499"
    },
    {
      "job": 85169695519,
      "time": 155,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8085734274"
    },
    {
      "job": 85169856143,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8085747310"
    },
    {
      "job": 85169856158,
      "time": 103,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8085746287"
    },
    {
      "job": 85169856157,
      "time": 74,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8085742827"
    },
    {
      "job": 85169856159,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8085742531"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "roxygen2",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "here",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.9.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.8.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "xec-cm",
      "count": 35,
      "uuid": 70643921
    },
    {
      "user": "jwokaty",
      "count": 2,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/xec-cm/biocroxytest",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/biocroxytest.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/xec-cm/biocroxytest",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "longtests_roclet",
    "use_longtests"
  ],
  "_help": [
    {
      "page": "longtests_roclet",
      "title": "Roclet for Long Tests",
      "topics": [
        "longtests_roclet"
      ]
    },
    {
      "page": "roclet_clean.roclet_longtests",
      "title": "Clean up test files in the 'longtests' directory",
      "topics": [
        "roclet_clean.roclet_longtests"
      ]
    },
    {
      "page": "roclet_output.roclet_longtests",
      "title": "Process blocks for 'longtests' roclet",
      "topics": [
        "roclet_output.roclet_longtests"
      ]
    },
    {
      "page": "roclet_process.roclet_longtests",
      "title": "Process blocks for 'longtests' roclet",
      "topics": [
        "roclet_process.roclet_longtests"
      ]
    },
    {
      "page": "use_longtests",
      "title": "Sets up overall longtests infrastructure",
      "topics": [
        "use_longtests"
      ]
    }
  ],
  "_pkglogo": "https://github.com/bioc/biocroxytest/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/bioc/biocroxytest/raw/HEAD/README.md",
  "_rundeps": [
    "brew",
    "callr",
    "cli",
    "commonmark",
    "cpp11",
    "desc",
    "evaluate",
    "fs",
    "glue",
    "highr",
    "knitr",
    "lifecycle",
    "magrittr",
    "otel",
    "pkgbuild",
    "pkgload",
    "processx",
    "ps",
    "R6",
    "rlang",
    "roxygen2",
    "rprojroot",
    "stringi",
    "stringr",
    "vctrs",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "biocroxytest.Rmd",
      "filename": "biocroxytest.html",
      "title": "Introduction to biocroxytest",
      "engine": "knitr::rmarkdown",
      "headings": [
        "biocroxytest setup",
        "Basic Process",
        "Session info"
      ],
      "created": "2023-12-20 13:44:11",
      "modified": "2024-01-17 12:48:30",
      "commits": 11
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "biocroxytest",
  "_universes": [
    "bioc",
    "xec-cm"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.9.0",
      "date": "2026-07-04T21:54:16.000Z",
      "distro": "resolute",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/40e5f3fb955edbcab9c2955ed0fa37aa1cc41eefa229a5282111f6d809d79731",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.9.0",
      "date": "2026-07-04T21:53:48.000Z",
      "distro": "resolute",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/a7e24579a9ec9e5db3488ac744a25f65bc87edb13a88b23428fa0b332e065a86",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.9.0",
      "date": "2026-07-04T21:52:32.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/2adf5d69162d8b9a3c672ad330aa6bad5eb454dbe3bde9eaf0dddbf731419e90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.9.0",
      "date": "2026-07-04T21:52:18.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/2dddc7690c2515201c1a5a80c48549c6858bbda60fe574303aa87fdb34dfd214",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.9.0",
      "date": "2026-07-04T21:53:09.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/62c1bfbc0c8a5c9751d6d5c76596bf1127d2d2a3715a5c2d3dfbfbd4512622f8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-04T21:52:41.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/9a4fa0a3bdf42795200f7c3c843da065ba9bb7c7023b5a8f80db617dd06855d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-04T21:52:13.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/8c7a276c8e26eac70be3579919547ffcafbdd734ccfbd7c8913b31e9e0ed2f36",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-04T21:52:10.000Z",
      "commit": "d5876a7a5aa55e70f05109335a2b464870e885bc",
      "fileid": "https://r2.ropensci.org/b441fd562ee93ed7de85bd0e3b1547066a37db067ba15200e8b520307c44232d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28720687580"
    }
  ]
}