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files from source package tarballs", "topics": [ "extractNEWS" ] }, { "page": "extractTopLevelFiles", "title": "Extract files from the top level of source package tarballs", "topics": [ "extractTopLevelFiles" ] }, { "page": "extractVignettes", "title": "Extract pdf vignettes from local package repository", "topics": [ "extractHTMLDocuments", "extractVignettes" ] }, { "page": "genReposControlFiles", "title": "Generate CRAN-style repository control files", "topics": [ "genReposControlFiles" ] }, { "page": "getBiocSubViews", "title": "Build a list of BiocView objects from a package repository", "topics": [ "getBiocSubViews" ] }, { "page": "getBiocViews", "title": "Build a list of BiocView objects from a package repository", "topics": [ "getBiocViews" ] }, { "page": "getCurrentbiocViews", "title": "Get a list of biocViews for each branch", "topics": [ "getCurrentbiocViews" ] }, { "page": "getPackageNEWS", "title": "Retrieve and print package NEWS", "topics": [ "getPackageNEWS", "printNEWS" ] }, { "page": "getPackageTitles", "title": "Retrieve list of package titles and print package Description", "topics": [ "getPackageDescriptions", "getPackageTitles" ] }, { "page": "getPacksAndViews", "title": "Parse VIEWS file for views and packages", "topics": [ "getPacksAndViews", "makeVocInfo", "permulist", "pump", "tellSubTop", "tellSuperTop" ] }, { "page": "getSubTerms", "title": "Retrieve a term and its children from a vocab DAG", "topics": [ "getSubTerms" ] }, { "page": "guessPackageType", "title": "Guess Package Type (Software, ExperimentData, AnnotationData) using existing biocViews.", "topics": [ "guessPackageType" ] }, { "page": "htmlDoc", "title": "Create a complete HTML document representation of an object", "topics": [ "htmlDoc" ] }, { "page": "htmlFilename", "title": "Return a filename for an object's HTML representation", "topics": [ "htmlFilename", "htmlFilename,character-method" ] }, { "page": "Htmlized-class", "title": "Class \"Htmlized\"", "topics": [ 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