{
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  "Package": "benchdamic",
  "Type": "Package",
  "Title": "Benchmark of differential abundance methods on microbiome data",
  "Version": "1.19.0",
  "Authors@R": "c(person(given = \"Matteo\",\nfamily = \"Calgaro\",\nemail = \"mcalgaro93@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3056-518X\")),\nperson(given = \"Chiara\",\nfamily = \"Romualdi\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4792-9047\")),\nperson(given = \"Davide\",\nfamily = \"Risso\",\nemail = \"mcalgaro93@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8508-5012\")),\nperson(given = \"Nicola\",\nfamily = \"Vitulo\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-9571-0747\")))",
  "Description": "Starting from a microbiome dataset (16S or WMS with\nabsolute count values) it is possible to perform several\nanalysis to assess the performances of many differential\nabundance detection methods. A basic and standardized version\nof the main differential abundance analysis methods is supplied\nbut the user can also add his method to the benchmark. The\nanalyses focus on 4 main aspects: i) the goodness of fit of\neach method's distributional assumptions on the observed count\ndata, ii) the ability to control the false discovery rate, iii)\nthe within and between method concordances, iv) the\ntruthfulness of the findings if any apriori knowledge is given.\nSeveral graphical functions are available for result\nvisualization.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
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  "biocViews": "Metagenomics, Microbiome, DifferentialExpression,\nMultipleComparison, Normalization, Preprocessing, Software",
  "BugReports": "https://github.com/mcalgaro93/benchdamic/issues",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:18 UTC",
  "RemoteUrl": "https://github.com/bioc/benchdamic",
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  "Packaged": {
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  "Author": "Matteo Calgaro [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3056-518X>),\nChiara Romualdi [aut] (ORCID: <https://orcid.org/0000-0003-4792-9047>),\nDavide Risso [aut] (ORCID: <https://orcid.org/0000-0001-8508-5012>),\nNicola Vitulo [aut] (ORCID: <https://orcid.org/0000-0002-9571-0747>)",
  "Maintainer": "Matteo Calgaro <mcalgaro93@gmail.com>",
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  "_published": "2026-06-02T13:09:51.993Z",
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      "title": "(Data) Microbial metabolism",
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      "author": "Matteo Calgaro, Chiara Romualdi, Davide Risso, Nicola Vitulo",
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