{ "_id": "6abe121b99f7aa8c6aa519a2", "Package": "beadarray", "Title": "Quality assessment and low-level analysis for Illumina BeadArray\ndata", "Version": "2.63.4", "Date": "2026-08-31", "Author": "Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt\nRitchie", "Maintainer": "Mark Dunning ", "Description": "The package is able to read bead-level data (raw TIFFs and\ntext files) output by BeadScan as well as bead-summary data\nfrom BeadStudio. 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[ "numBeads" ] }, { "page": "outlierplot", "title": "Plot outlier locations", "topics": [ "outlierplot" ] }, { "page": "platformSigs", "title": "Annotation definitions", "topics": [ "platformSigs" ] }, { "page": "plotBeadLocations", "title": "Plot bead locations", "topics": [ "plotBeadLocations" ] }, { "page": "plotChipLayout", "title": "Function to Plot the Layout of an Illumina BeadChip", "topics": [ "plotChipLayout" ] }, { "page": "maplots", "title": "Function to construct the classic MA plots from a dataset", "topics": [ "plotMA,ExpressionSetIllumina-method" ] }, { "page": "plotMAXY", "title": "Scatter plots and MA-plots for all specified arrays", "topics": [ "plotMA", "plotMAXY", "plotXY" ] }, { "page": "plotTIFF", "title": "Produce plots of the Illumina tiff images", "topics": [ "plotTIFF" ] }, { "page": "poscontPlot", "title": "Plot the positive controls", "topics": [ "poscontPlot" ] }, { "page": "processSwathData", "title": "Prepare iScan data for use with beadarray", "topics": 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