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  "Type": "Package",
  "Title": "An R package for the Bayesian analysis of differential\nsubcellular localisation experiments",
  "Version": "1.17.0",
  "Authors@R": "c(person(family = \"Crook\", given = \"Oliver M.\",\nemail = \"oliver.crook@stats.ox.ac.uk\",\ncomment = c(ORCID = \"0000-0001-5669-8506\"),\nrole = c(\"aut\", \"cre\")),\nperson(family = \"Breckels\", given = \"Lisa\",\nemail = \"lms79@cam.ac.uk\",\ncomment = c(ORCID = \"0000-0001-8918-7171\"),\nrole = c(\"aut\")))",
  "Description": "The Bandle package enables the analysis and visualisation\nof differential localisation experiments using\nmass-spectrometry data. Experimental methods supported include\ndynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic\nPCP. It provides Bioconductor infrastructure to analyse these\ndata.",
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  "biocViews": "Bayesian, Classification, Clustering, ImmunoOncology,\nQualityControl,DataImport, Proteomics, MassSpectrometry",
  "BugReports": "https://github.com/ococrook/bandle/issues",
  "URL": "http://github.com/ococrook/bandle",
  "Language": "en-US",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:58:10 UTC",
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  "Author": "Oliver M. Crook [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5669-8506>),\nLisa Breckels [aut] (ORCID: <https://orcid.org/0000-0001-8918-7171>)",
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    "summaries"
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      "page": "bandle-package",
      "title": "An R package for the Bayesian analysis of differential subcellular localisation experiments",
      "topics": [
        "bandle-package"
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    },
    {
      "page": "bandle",
      "title": "Differential localisation experiments using the bandle method",
      "topics": [
        "bandle",
        "diffLoc"
      ]
    },
    {
      "page": "bandle_get_outliers",
      "title": "Number of outliers at each iteration of MCMC",
      "topics": [
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      ]
    },
    {
      "page": "bandleParams",
      "title": "Infrastructure to to store and process MCMC results",
      "topics": [
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        ".bandleChains",
        ".bandleParams",
        ".bandleSummaries",
        ".bandleSummary",
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        "bandleSummary-class",
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        "length,nicheParams-method",
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        "[[,bandleSummaries,ANY,ANY-method",
        "[[,nicheParams,ANY,ANY-method"
      ]
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    {
      "page": "bandle-predict",
      "title": "Make predictions from a bandle analysis",
      "topics": [
        "bandlePredict"
      ]
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    {
      "page": "bandle-process",
      "title": "process bandle results",
      "topics": [
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      "title": "bessel function of the second kind from boost library",
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        "centeredDatamatern",
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        "trenchInvcpp"
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    {
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      "title": "Compute differential localisation probabilities from ms-based experiments using the bandle method",
      "topics": [
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        "bootstrapdiffLocprob",
        "diffLocalisationProb"
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    },
    {
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        "fitGPmatern",
        "fitGPmaternPC",
        "plotGPmatern"
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      "topics": [
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        "gpParams-class"
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      "page": "bandle-gp",
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        "kldirpg",
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    {
      "page": "bandle-meanOrganelle",
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      "page": "bandle-plots-spatial",
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    {
      "page": "bandle-plots",
      "title": "inherits StatSratum",
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