{
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  "Package": "aracne.networks",
  "Type": "Package",
  "Title": "ARACNe-inferred gene networks from TCGA tumor datasets",
  "Version": "1.39.1",
  "Authors@R": "c(\nperson(\"Federico M.\", \"Giorgi\", email = \"federico.giorgi@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7325-9908\")),\nperson(\"Mariano J.\", \"Alvarez\", email = \"reef103@gmail.com\",\nrole = \"aut\"))",
  "Description": "This package provides access to ARACNe-inferred gene\nregulatory networks (regulons) from TCGA tumor datasets. The\nnetworks are hosted on Zenodo, downloaded on demand and cached\nlocally with BiocFileCache. The package also contains a\nfunction to export them into plain-text format.",
  "License": "file LICENSE",
  "URL": "https://github.com/federicogiorgi/aracne.networks",
  "BugReports": "https://github.com/federicogiorgi/aracne.networks/issues",
  "biocViews": "ExperimentData, Genome, Homo_sapiens_Data, CancerData",
  "NeedsCompilation": "no",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-09-23 13:51:57 UTC",
  "RemoteUrl": "https://github.com/bioc/aracne.networks",
  "RemoteRef": "HEAD",
  "RemoteSha": "d000659130672ee12ffa5a287616ffe16c334eb2",
  "Packaged": {
    "Date": "2026-10-10 10:37:40 UTC",
    "User": "root"
  },
  "Author": "Federico M. Giorgi [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7325-9908>),\nMariano J. Alvarez [aut]",
  "Maintainer": "Federico M. Giorgi <federico.giorgi@gmail.com>",
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  "_type": "src",
  "_file": "aracne.networks_1.39.1.tar.gz",
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  "_expires": "2027-01-18T10:41:52.000Z",
  "_created": "2026-10-10T10:37:40.000Z",
  "_published": "2026-10-10T10:41:54.044Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045356396",
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  "_host": "GitHub-Actions",
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    "warning": 0,
    "note": 8
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    "id": "d000659130672ee12ffa5a287616ffe16c334eb2",
    "author": "federicogiorgi <federico.giorgi@gmail.com>",
    "committer": "federicogiorgi <federico.giorgi@gmail.com>",
    "message": "Point to the Zenodo record 22918956\n\nFill in the Zenodo record (doi:10.5281/zenodo.22918956) hosting the\nnetworks and document the CC BY-NC-ND 4.0 license of the data files.\n",
    "time": 1790171517
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  "_maintainer": {
    "name": "Federico M. Giorgi",
    "email": "federico.giorgi@gmail.com",
    "login": "federicogiorgi",
    "description": "Professor of Bioinformatics at the University of Bologna",
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  "_stars": 7,
  "_userbio": {
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  "_searchresults": 51,
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  "_exports": [
    "getRegulon",
    "listRegulons",
    "write.regulon"
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  "_help": [
    {
      "page": "aracne.networks-package",
      "title": "ARACNe-inferred gene networks from TCGA tumor datasets",
      "topics": [
        "aracne.networks-package",
        "aracne.networks"
      ]
    },
    {
      "page": "getRegulon",
      "title": "Retrieve ARACNe networks from the online repository",
      "topics": [
        "getRegulon",
        "listRegulons"
      ]
    },
    {
      "page": "regulons",
      "title": "Context-specific ARACNe interactomes of human tumors",
      "topics": [
        "regulonblca",
        "regulonbrca",
        "reguloncesc",
        "reguloncoad",
        "regulonesca",
        "regulongbm",
        "regulonhnsc",
        "regulonkirc",
        "regulonkirp",
        "regulonlaml",
        "regulonlihc",
        "regulonluad",
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        "regulonov",
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        "regulonthca",
        "regulonthym",
        "regulonucec"
      ]
    },
    {
      "page": "write.regulon",
      "title": "Print a regulon object into a text file",
      "topics": [
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      ]
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  ],
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      "title": "aracne.networks, a data package containing gene regulatory networks assembled from TCGA data by the ARACNe algorithm",
      "author": "Federico M. Giorgi, Mariano J. Alvarez, Andrea Califano",
      "engine": "knitr::rmarkdown",
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