{
  "_id": "6abe852199f7aa8c6aa571bc",
  "Package": "annotation",
  "Title": "Genomic Annotation Resources",
  "Version": "1.37.0",
  "Date": "2026-04-06",
  "Encoding": "UTF-8",
  "Authors@R": "c(person(role=\"aut\", \"Marc\", \"RJ Carlson\", email = \"mrjc42@gmail.com\"),\nperson(role=\"aut\", \"Hervé\", \"Pagès\", email = \"hpages.on.github@gmail.com\"),\nperson(role=\"aut\", \"Sonali\", \"Arora\", email = \"sarora@fredhutch.org\"),\nperson(role=\"aut\", \"Valerie\", \"Obenchain\", email = \"valerie.obenchain@roswellpark.org\"),\nperson(role=\"aut\", \"Martin\", \"Morgan\", email = \"martin.morgan@roswellpark.org\"),\nperson(\"Lori\", \"Shepherd\", role=\"ctb\", email = \"Lori.Shepherd@roswellpark.org\"),\nperson(role=\"cre\", \"Bioconductor Package Maintainer\", email = \"maintainer@bioconductor.org\"))",
  "Description": "Annotation resources make up a significant proportion of\nthe Bioconductor project. And there are also a diverse set of\nonline resources available which are accessed using specific\npackages.  This walkthrough will describe the most popular of\nthese resources and give some high level examples on how to use\nthem.",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "biocViews": "AnnotationWorkflow, Workflow",
  "Workflow": "true",
  "NeedsCompilation": "no",
  "URL": "http://bioconductor.org/packages/annotation",
  "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibxml2-dev libssl-dev xz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:17 UTC",
  "RemoteUrl": "https://github.com/bioc/annotation",
  "RemoteRef": "HEAD",
  "RemoteSha": "77a311d7329a0be174a0ae1bb73462fed53287ba",
  "Packaged": {
    "Date": "2026-10-01 15:41:35 UTC",
    "User": "root"
  },
  "Author": "Marc RJ Carlson [aut],\nHervé Pagès [aut],\nSonali Arora [aut],\nValerie Obenchain [aut],\nMartin Morgan [aut],\nLori Shepherd [ctb],\nBioconductor Package Maintainer [cre]",
  "Maintainer": "Bioconductor Package Maintainer <maintainer@bioconductor.org>",
  "_user": "bioc",
  "_type": "src",
  "_file": "annotation_1.37.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/72facf222c57212e2f3e18ca736da55f7f8fb9f8a68f2fed427b6871b903c5da",
  "_filesize": 284260,
  "_sha256": "72facf222c57212e2f3e18ca736da55f7f8fb9f8a68f2fed427b6871b903c5da",
  "_expires": "2027-01-09T16:06:55.000Z",
  "_created": "2026-10-01T15:41:35.000Z",
  "_published": "2026-10-07T14:17:56.367Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 8
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250",
  "_status": "failure",
  "_upstream": "https://github.com/bioc/annotation",
  "_commit": {
    "id": "77a311d7329a0be174a0ae1bb73462fed53287ba",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380017
  },
  "_maintainer": {
    "name": "Bioconductor Package Maintainer",
    "email": "maintainer@bioconductor.org",
    "login": "bioconductor-bot",
    "description": "",
    "uuid": 11681645
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 110450489591,
      "time": 400,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11174628196"
    },
    {
      "job": 110450489666,
      "time": 415,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11175385389"
    },
    {
      "job": 110450489745,
      "time": 541,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11175230914"
    },
    {
      "job": 110450489753,
      "time": 211,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11175921328"
    },
    {
      "job": 110450489698,
      "time": 323,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11176166205"
    },
    {
      "job": 110445798347,
      "time": 625,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11174242695"
    },
    {
      "job": 110450489713,
      "time": 381,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11175215423"
    },
    {
      "job": 110450489773,
      "time": 513,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11175210827"
    },
    {
      "job": 110450489711,
      "time": 499,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11174493463"
    },
    {
      "job": 110450489752,
      "time": 494,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11174788414"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "GenomeInfoDb",
      "role": "Depends"
    },
    {
      "package": "VariantAnnotation",
      "role": "Depends"
    },
    {
      "package": "AnnotationHub",
      "role": "Depends"
    },
    {
      "package": "TxDb.Hsapiens.UCSC.hg19.knownGene",
      "role": "Depends"
    },
    {
      "package": "TxDb.Hsapiens.UCSC.hg38.knownGene",
      "role": "Depends"
    },
    {
      "package": "TxDb.Mmusculus.UCSC.mm10.ensGene",
      "role": "Depends"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Depends"
    },
    {
      "package": "org.Mm.eg.db",
      "role": "Depends"
    },
    {
      "package": "Homo.sapiens",
      "role": "Depends"
    },
    {
      "package": "BSgenome.Hsapiens.UCSC.hg19",
      "role": "Depends"
    },
    {
      "package": "biomaRt",
      "role": "Depends"
    },
    {
      "package": "BSgenome",
      "role": "Depends"
    },
    {
      "package": "TxDb.Athaliana.BioMart.plantsmart22",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_topics": [
    "annotationworkflow",
    "workflow"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 471,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/annotation.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [],
  "_help": [],
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocIO",
    "BiocManager",
    "BiocParallel",
    "BiocVersion",
    "biomaRt",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "BSgenome",
    "BSgenome.Hsapiens.UCSC.hg19",
    "cachem",
    "cigarillo",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "dplyr",
    "fastmap",
    "filelock",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomeInfoDb",
    "GenomicAlignments",
    "GenomicFeatures",
    "GenomicRanges",
    "glue",
    "GO.db",
    "graph",
    "hms",
    "Homo.sapiens",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lambda.r",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "org.Hs.eg.db",
    "org.Mm.eg.db",
    "OrganismDbi",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "rappdirs",
    "RBGL",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "Rsamtools",
    "RSQLite",
    "rtracklayer",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "snow",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "TxDb.Athaliana.BioMart.plantsmart22",
    "TxDb.Hsapiens.UCSC.hg19.knownGene",
    "TxDb.Hsapiens.UCSC.hg38.knownGene",
    "TxDb.Mmusculus.UCSC.mm10.ensGene",
    "UCSC.utils",
    "utf8",
    "VariantAnnotation",
    "vctrs",
    "withr",
    "XML",
    "xml2",
    "XVector",
    "yaml"
  ],
  "_score": 1.4771212547196624,
  "_indexed": true,
  "_nocasepkg": "annotation",
  "_universes": [
    "bioc",
    "bioconductor-bot"
  ],
  "_progress_url": "https://github.com/r-universe/bioc/actions/runs/37635392873",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.37.0",
      "date": "2026-10-01T15:47:49.000Z",
      "distro": "resolute",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/731c81b9fdf92b569ef25b30aa56b822a0bdcf313e29e3038d3adc7aed0e778f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.37.0",
      "date": "2026-10-01T15:49:43.000Z",
      "distro": "resolute",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/fe61c531c000a73a3c713089eacdd655de457ba0e2f006a5ec33b5200ff1551b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.37.0",
      "date": "2026-10-01T16:03:39.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/e69cd0b9feadb4415e9a11f295a31a9b46736132b31b90ef30fac585b925d4d2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.37.0",
      "date": "2026-10-01T16:04:41.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/c88aff37dd3da8856dc5ae560fc2da2ec6fe23efed7a550d68db8e22399728d8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.37.0",
      "date": "2026-10-01T15:48:42.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/e2538af7846fb909683c76b0a5afbe5750c2b4c756e8367642147fe5de590a53",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.37.0",
      "date": "2026-10-01T15:49:07.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/048cc4756d59b5e2505bd233881fe24c6c0989aa15c4010e96b1cba46d0a82a2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.37.0",
      "date": "2026-10-01T15:48:58.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/b698fabdfcf659904fca28a0155b4b9c0a72100c01a283524e94466dcdf8b5e2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.37.0",
      "date": "2026-10-01T15:48:37.000Z",
      "commit": "77a311d7329a0be174a0ae1bb73462fed53287ba",
      "fileid": "https://r2.ropensci.org/f2a9189a7e87f2b846c1820a7432502ecea1141603ec8fbf3fc931e9d487f7f0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36884850250"
    }
  ]
}