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Smith", "email": "colin@colinsmith.org", "login": "colinasmith", "description": "Protein Dynamics and Design", "uuid": 1170378 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.5.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "BiocManager", "role": "Depends" }, { "package": "GO.db", "role": "Depends" }, { "package": "AnnotationDbi", "version": ">= 0.1.15", "role": "Imports" }, { "package": "DBI", "role": "Imports" }, { "package": "hgu95av2.db", "role": "Suggests" }, { "package": "multtest", "role": "Suggests" }, { "package": "tcltk", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 3, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23" } ], "_topics": [ "onechannel", 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"saveText", "selectorWidget", "show" ], "_datasets": [ { "name": "aafExpr", "title": "Sample ExpressionSet used for demonstration purposes", "object": "aafExpr", "file": "aafExpr.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "aaf.handler", "title": "Handle feching annotation data columns", "topics": [ "aaf.handler" ] }, { "page": "aafChromLoc", "title": "Constructor for aafChromLoc objects", "topics": [ "aafChromLoc" ] }, { "page": "aafChromLoc-class", "title": "Class aafChromLoc, a class for gene chromosome locations", "topics": [ "aafChromLoc-class" ] }, { "page": "aafChromosome", "title": "Constructor for aafChromosome objects", "topics": [ "aafChromosome" ] }, { "page": "aafChromosome-class", "title": "Class aafChromosome, a class for gene chromosome assignments", "topics": [ "aafChromosome-class" ] }, { "page": "aafCytoband", "title": "Constructor for aafCytoband objects", "topics": [ "aafCytoband" ] }, { "page": "aafCytoband-class", "title": "Class aafCytoband, a class for cytoband data", "topics": [ "aafCytoband-class", "getText,aafCytoband-method", "getURL,aafCytoband-method", "show,aafCytoband-method" ] }, { "page": "aafDescription", "title": "Constructor for aafDescription objects", "topics": [ "aafDescription" ] }, { "page": "aafDescription-class", "title": "Class aafDescription, a class for gene descriptions", "topics": [ "aafDescription-class" ] }, { "page": "aafExpr", "title": "Sample ExpressionSet used for demonstration purposes", "topics": [ "aafExpr" ] }, { "page": "aafGenBank", "title": "Constructor for aafGenBank objects", "topics": [ "aafGenBank" ] }, { "page": "aafGenBank-class", "title": "Class aafGenBank, a class for GenBank accession numbers", "topics": [ "aafGenBank-class", "getURL,aafGenBank-method" ] }, { "page": "aafGO", "title": "Constructor for aafGO objects", "topics": [ "aafGO" ] }, { "page": "aafGO-class", "title": "Class aafGO, a class for gene ontology ids", "topics": [ "aafGO-class", "getCSS,aafGO-method", "getHTML,aafGO-method", "getTD,aafGO-method", "getText,aafGO-method", "getURL,aafGO-method" ] }, { "page": "aafGOItem-class", "title": "Class aafGOItem, a class for gene ontology id elements", "topics": [ "aafGOItem", "aafGOItem-class", "getHTML,aafGOItem-method", "getText,aafGOItem-method", "getURL,aafGOItem-method", "show,aafGOItem-method" ] }, { "page": "aafIntensity-class", "title": "Class aafIntensity, a class for gene expression values", "topics": [ "aafIntensity", "aafIntensity-class", "getTD,aafIntensity-method" ] }, { "page": "aafList-class", "title": "Class aafList, a specialized subclass of list", "topics": [ "aafList", "aafList-class", "getCSS,aafList-method", "getHTML,aafList-method", "getTD,aafList-method", "getText,aafList-method", "getURL,aafList-method", "show,aafList-method", "[,aafList-method" ] }, { "page": "aafLocusLink", "title": "Constructor for aafLocusLink objects", "topics": [ "aafLocusLink" ] }, { "page": "aafLocusLink-class", "title": "Class aafLocusLink, a class for LocusLink ids", "topics": [ "aafLocusLink-class", "getURL,aafLocusLink-method" ] }, { "page": "aafPathway", "title": "Constructor for aafPathway objects", "topics": [ "aafPathway" ] }, { "page": "aafPathway-class", "title": "Class aafPathway, a class for KEGG pathway ids", "topics": [ "aafPathway-class", "getCSS,aafPathway-method", "getHTML,aafPathway-method", "getTD,aafPathway-method", "getText,aafPathway-method", "getURL,aafPathway-method" ] }, { "page": "aafPathwayItem-class", "title": "Class aafPathwayItem, a class for KEGG pathway id elements", "topics": [ "aafPathwayItem", "aafPathwayItem-class", "getHTML,aafPathwayItem-method", "getText,aafPathwayItem-method", "getURL,aafPathwayItem-method", "show,aafPathwayItem-method" ] }, { "page": "aafProbe", "title": "Constructor for aafProbe objects", "topics": [ "aafProbe" ] }, { "page": "aafProbe-class", "title": "Class aafProbe, a class for Probe ids", "topics": [ 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"aafTable", "title": "Constructor for aafTable objects", "topics": [ "aafTable" ] }, { "page": "aafTable-class", "title": "Class aafTable, a tabular microarray data class", "topics": [ "$.aafTable", "aafTable-class", "colnames", "colnames,aafTable-method", "colnames<-", "colnames<-,aafTable-method", "dim.aafTable", "merge.aafTable", "probeids", "probeids,aafTable-method", "probeids<-", "probeids<-,aafTable-method", "rbind.aafTable", "saveHTML", "saveHTML,aafTable-method", "saveText", "saveText,aafTable-method", "[,aafTable-method", "[[,aafTable-method" ] }, { "page": "aafTableAnn", "title": "Constructor for aafTable objects from annotation data", "topics": [ "aafTableAnn" ] }, { "page": "aafTableFrame", "title": "Constructor for aafTable objects from data frames", "topics": [ "aafTableFrame" ] }, { "page": "aafTableInt", "title": "Constructor for aafTable objects from ExpressionSets", "topics": [ "aafTableInt" ] }, { "page": "getCSS-methods", "title": "Methods for function getCSS", 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