{
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  "Package": "affylmGUI",
  "Version": "1.87.0",
  "Date": "2020-04-13",
  "Title": "GUI for limma Package with Affymetrix Microarrays",
  "Author": "James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson\n[aut], Keith Satterley [ctb]",
  "Maintainer": "Gordon Smyth <smyth@wehi.edu.au>",
  "Description": "A Graphical User Interface (GUI) for analysis of\nAffymetrix microarray gene expression data using the affy and\nlimma packages.",
  "License": "GPL (>=2)",
  "URL": "http://bioinf.wehi.edu.au/affylmGUI/",
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    "affylmGUIhelp",
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    "ExportNormalizedExpressionValues",
    "ExportTopTable",
    "fixSeps",
    "generalPlotFunction",
    "GetComponentsToExportInHTMLreport",
    "GetContrast",
    "GetContrastNamesForHeatDiagram",
    "GetContrastParameterizationName",
    "GetContrasts",
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    "GetJpegOrPngX11Params",
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    "getPackageVersion",
    "GetParameterizationName",
    "GetPlotLabels",
    "GetPlotSize",
    "GetPlotTitle",
    "GetPValueCutoff",
    "GetResidualTypeChoice",
    "GetRNATypesFrom.ContrastsFromDropDowns.String",
    "GetSetNames",
    "GetSlideNum",
    "GetSlideNums",
    "GetWhichProbes",
    "GetWtAreaParams",
    "GetWtFlagParams",
    "HeatDiagramDialog",
    "HeatDiagramPlot",
    "HTMLplotUsingFunction",
    "ImageArrayPlot",
    "ImageQualityResidualPlot",
    "ImageQualityWeightPlot",
    "initGlobals",
    "IntensityHistogram",
    "IntensityHistogramAll",
    "limmaHelp",
    "LogOddsPlot",
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    "NormalizedIntensityBoxPlot",
    "NormalizeNow",
    "nstrstr",
    "NUSEPlotAll",
    "onDestroy",
    "onExit",
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    "OpenLimmaFile",
    "OpenTargetsFile",
    "PlotOptions",
    "QQTplot",
    "RawIntensityBoxPlot",
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    "Resize",
    "RLEPlotAll",
    "RNADegradationPlotAll",
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    "SaveGraphAsJpeg",
    "SaveGraphAsPDF",
    "SaveGraphAsPNG",
    "SaveGraphAsPostscript",
    "SaveLimmaFile",
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    "SetupPlotMenus",
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    "showCitations",
    "showTopTable",
    "SimplifyContrastsExpression",
    "strstr",
    "tclArrayVar",
    "TclRequire",
    "Try",
    "TryReadImgProcFile",
    "UpDownOrBoth",
    "vennDiagramaffylmGUI",
    "VennDiagramPlot",
    "ViewContrastsMatrixAsPairs",
    "ViewContrastsMatrixInTable",
    "ViewExistingContrastParameterization",
    "ViewRNATargets"
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      "title": "The affylmGUI Package: Graphical User Interface for limma analysis of Affymetrix microarrays",
      "topics": [
        "affylmGUI-package"
      ]
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    {
      "page": "affylmGUI",
      "title": "Graphical User Interface for the limma microarray package",
      "topics": [
        "affylmGUI"
      ]
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        "affyHelp",
        "affylmGUIhelp",
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        "affyPlotMAcontrast",
        "ChooseCDF",
        "ChooseContrastParameterization",
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        "ComputeLinearModelFit",
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        "DeleteContrastParameterization",
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        "DensityPlotAll",
        "evalRcode",
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        "ExportNormalizedExpressionValues",
        "ExportTopTable",
        "fixSeps",
        "generalPlotFunction",
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        "GetContrastNamesForHeatDiagram",
        "GetContrastParameterizationName",
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        "GetJpegOrPngX11Params",
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        "GetMultipleContrasts",
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        "GetParameterizationName",
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