{ "_id": "6ae305fd95ca2370cc8cd3e2", "Package": "affyio", "Version": "1.83.0", "Title": "Tools for parsing Affymetrix data files", "Author": "Ben Bolstad ", "Maintainer": "Ben Bolstad ", "Description": "Routines for parsing Affymetrix data files based upon file\nformat information. Primary focus is on accessing the CEL and\nCDF file formats.", "License": "LGPL (>= 2)", "URL": "https://github.com/bmbolstad/affyio", "biocViews": "Microarray, DataImport, Infrastructure", "LazyLoad": "yes", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:30:01 UTC", "RemoteUrl": "https://github.com/bioc/affyio", "RemoteRef": "HEAD", "RemoteSha": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-29 08:31:33 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "affyio_1.83.0.tar.gz", "_fileid": "https://r2.ropensci.org/27ce78cfdd0ec7eb7a25f3bd380166ed01c0a968f1cd738cbd2f99e8904ab090", "_filesize": 207042, "_sha256": "27ce78cfdd0ec7eb7a25f3bd380166ed01c0a968f1cd738cbd2f99e8904ab090", "_expires": "2027-02-06T08:38:19.000Z", "_created": "2026-10-29T08:31:33.000Z", "_published": "2026-10-29T08:38:21.137Z", "_upstream": "https://github.com/bioc/affyio", "_status": "success", "_maintainer": { "name": "Ben Bolstad", "email": "bmb@bmbolstad.com", "login": "bmbolstad", "description": "", "uuid": 5719304 }, "_jobs": [ { "job": 123343035065, "time": 112, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12883786744" }, { "job": 123343035289, "time": 89, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "12884225027" }, { "job": 123343035270, "time": 229, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12884071122" }, { "job": 123343035283, "time": 91, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12883382375" }, { "job": 123343035379, "time": 201, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12883816898" }, { "job": 123343035185, "time": 116, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "12884205040" }, { "job": 123343035227, "time": 271, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12883203937" }, { "job": 123343035258, "time": 106, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12883662106" }, { "job": 123343035323, "time": 251, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12884371304" }, { "job": 123341842293, "time": 175, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12883048495" }, { "job": 123343035105, "time": 72, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12883312674" }, { "job": 123343035246, "time": 220, "config": "windows-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "12883657237" }, { "job": 123343035373, "time": 100, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12884050717" }, { "job": 123343035423, "time": 74, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12883058963" }, { "job": 123343035296, "time": 212, "config": "windows-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12883034223" }, { "job": 123343035231, "time": 74, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12882654865" } ], "_bioccheck": { "error": 3, "warning": 0, "note": 9 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737", "_commit": { "id": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379401 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.6.0", "role": "Depends" }, { "package": "methods", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 152, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.83.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.82.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "microarray", "dataimport", "infrastructure", "zlib" ], "_stars": 4, "_contributors": [ { "user": "bmbolstad", "count": 47, "uuid": 5719304 }, { "user": "dtenenba", "count": 22, "uuid": 2286826 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "hpages", "count": 3, "uuid": 8810451 }, { "user": "dtrudg", "count": 2, "uuid": 4522799 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "jmacdon", "count": 1, "uuid": 5940924 }, { "user": "sanchit-saini", "count": 1, "uuid": 49326387 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 480, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 16474, "source": "https://www.bioconductor.org/packages/stats/bioc/affyio" }, "_mentions": 5, "_devurl": "https://github.com/bmbolstad/affyio", "_searchresults": 55, "_rbuild": "4.6.1", "_assets": [ "extra/affyio.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf" ], "_homeurl": "https://github.com/bmbolstad/affyio", "_realowner": "bioc", "_cranurl": false, "_exports": [ "check.cdf.type", "get.celfile.dates", "read_abatch", "read_abatch_stddev", "Read.CC.Generic", "read.cdffile.list", "read.celfile", "read.celfile.header", "read.celfile.probeintensity.matrices", "Read.CYCHP" ], "_help": [ { "page": "check.cdf.type", "title": "CDF file format function", "topics": [ "check.cdf.type" ] }, { "page": "get.celfile.dates", "title": "Extract Dates from CEL files", "topics": [ "get.celfile.dates" ] }, { "page": "read.cdffile.list", "title": "Read CDF file into an R list", "topics": [ "read.cdffile.list" ] }, { "page": "read.celfile", "title": "Read a CEL file into an R list", "topics": [ "read.celfile" ] }, { "page": "read.celfile.header", "title": "Read header information from cel file", "topics": [ "read.celfile.header" ] }, { "page": "read.celfile.probeintensity.matrices", "title": "Read PM or MM from CEL file into matrices", "topics": [ "read.celfile.probeintensity.matrices" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg+really1.3.1-1ubuntu3.2", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" } ], "_score": 9.12127657212625, "_indexed": true, "_nocasepkg": "affyio", "_universes": [ "bioc", "bmbolstad" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-10-29T08:33:16.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/242ad461e8c73f8dc3c97149ef0e273abc45fa07b73c3747fb55e939ef0e5cbb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-10-29T08:35:27.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/eb3ff9e3de8e4785033ea70eb2f162a365682fe7fb2fc52965cc852b2499d18c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "linux", "version": "1.83.0", "date": "2026-10-29T08:33:19.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/628998d22a784bdf4353f486210bd156e87012b0f9fae61253f9e7cd81ef40dc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "linux", "version": "1.83.0", "date": "2026-10-29T08:35:00.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/14e47733cf3a264245d21477b614e8938e864f17e41335915335a1b6252bbb61", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-10-29T08:34:03.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/28772cb4bd74f55340bbd4188889d5047c470be3986554db31e7f6b3d86c3cfd", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-10-29T08:36:30.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/2c470dacc0d68690726c6fcfc2c04aad91e0d5fb25c5101eab29e87dc9773f9d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "mac", "version": "1.83.0", "date": "2026-10-29T08:34:32.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/2bf42e53e4e471122130f08c7ff4cbf5a2e369b6056bae404020c220f78f2b91", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "mac", "version": "1.83.0", "date": "2026-10-29T08:37:06.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/dca69220cd5d90e95e97076155d2709da8a6ad2e1fa12f53d9501da95e19b778", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.0", "os": "wasm", "version": "1.83.0", "date": "2026-10-29T08:33:14.000Z", "arch": "emscripten", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/98ff0d38b976376619dee32db9e98a2797ac432568426271298f3f735146a7bd", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.7.0", "os": "win", "version": "1.83.0", "date": "2026-10-29T08:35:16.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/3f346bd764a40d817043050ea7cd0fe65a563b69ce4ca65a02bc413f9af4e747", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.7.0", "os": "win", "version": "1.83.0", "date": "2026-10-29T08:32:36.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/6907177a0315b0e67e20804bf746c292aee15033c44debc51a0effa3e30f00cf", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.5.3", "os": "win", "version": "1.83.0", "date": "2026-10-29T08:32:46.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/6f7da571501a62072e5ac2a69e615c3ca8c2f13d2d5c59cc1c3a3e856af982c1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "win", "version": "1.83.0", "date": "2026-10-29T08:35:11.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/560c9a0220969c859cfd75d6d719019777676feab2fded8700a60c727c1f2bdd", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" }, { "r": "4.6.1", "os": "win", "version": "1.83.0", "date": "2026-10-29T08:32:43.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/bf8d9323e5c09c5de7f3158617ad90af69109db27c86c2043dcb0d0dc8bc0c2c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40842411737" } ] }