{ "_id": "6a61d15e768d0b54cfc78fa3", "Package": "affyio", "Version": "1.83.0", "Title": "Tools for parsing Affymetrix data files", "Author": "Ben Bolstad ", "Maintainer": "Ben Bolstad ", "Description": "Routines for parsing Affymetrix data files based upon file\nformat information. Primary focus is on accessing the CEL and\nCDF file formats.", "License": "LGPL (>= 2)", "URL": "https://github.com/bmbolstad/affyio", "biocViews": "Microarray, DataImport, Infrastructure", "LazyLoad": "yes", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:30:01 UTC", "RemoteUrl": "https://github.com/bioc/affyio", "RemoteRef": "HEAD", "RemoteSha": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-23 08:11:11 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "affyio_1.83.0.tar.gz", "_fileid": "https://r2.ropensci.org/66e14f56c72ef8ffa1a727d4761eb67e6a18ae38a18d2078b5d4b138c19097d2", "_filesize": 206233, "_sha256": "66e14f56c72ef8ffa1a727d4761eb67e6a18ae38a18d2078b5d4b138c19097d2", "_expires": "2026-10-31T08:31:24.000Z", "_created": "2026-07-23T08:11:11.000Z", "_published": "2026-07-23T08:31:25.945Z", "_bioccheck": { "error": 3, "warning": 1, "note": 9 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491", "_status": "success", "_upstream": "https://github.com/bioc/affyio", "_commit": { "id": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379401 }, "_maintainer": { "name": "Ben Bolstad", "email": "bmb@bmbolstad.com", "login": "bmbolstad", "description": "", "uuid": 5719304 }, "_distro": "resolute", "_jobs": [ { "job": 89151856125, "time": 143, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8556875212" }, { "job": 89151856153, "time": 142, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "8556874767" }, { "job": 89151856197, "time": 147, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8556876206" }, { "job": 89151856282, "time": 154, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8556878467" }, { "job": 89151856209, "time": 187, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8556889351" }, { "job": 89151856122, "time": 71, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8556851862" }, { "job": 89151856142, "time": 204, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8556895204" }, { "job": 89151856128, "time": 98, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8556860297" }, { "job": 89151856107, "time": 184, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8556888390" }, { "job": 89151488594, "time": 141, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8556829047" }, { "job": 89151856104, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8556858949" }, { "job": 89151856114, "time": 84, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8556855749" }, { "job": 89151856152, "time": 70, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8556851136" }, { "job": 89151856145, "time": 83, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8556855455" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.6.0", "role": "Depends" }, { "package": "methods", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 119, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.83.0", "bioc": "3.24" }, { "branch": "release", "version": "1.82.0", "bioc": "3.23" } ], "_topics": [ "microarray", "dataimport", "infrastructure", "zlib" ], "_stars": 4, "_contributors": [ { "user": "bmbolstad", "count": 47, "uuid": 5719304 }, { "user": "dtenenba", "count": 22, "uuid": 2286826 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "hpages", "count": 3, "uuid": 8810451 }, { "user": "dtrudg", "count": 2, "uuid": 4522799 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "jmacdon", "count": 1, "uuid": 5940924 }, { "user": "sanchit-saini", "count": 1, "uuid": 49326387 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 450, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 13136, "source": "https://www.bioconductor.org/packages/stats/bioc/affyio" }, "_mentions": 5, "_devurl": "https://github.com/bmbolstad/affyio", "_searchresults": 51, "_rbuild": "4.6.1", "_assets": [ "extra/affyio.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_homeurl": "https://github.com/bmbolstad/affyio", "_realowner": "bioc", "_cranurl": false, "_exports": [ "check.cdf.type", "get.celfile.dates", "read_abatch", "read_abatch_stddev", "Read.CC.Generic", "read.cdffile.list", "read.celfile", "read.celfile.header", "read.celfile.probeintensity.matrices", "Read.CYCHP" ], "_help": [ { "page": "check.cdf.type", "title": "CDF file format function", "topics": [ "check.cdf.type" ] }, { "page": "get.celfile.dates", "title": "Extract Dates from CEL files", "topics": [ "get.celfile.dates" ] }, { "page": "read.cdffile.list", "title": "Read CDF file into an R list", "topics": [ "read.cdffile.list" ] }, { "page": "read.celfile", "title": "Read a CEL file into an R list", "topics": [ "read.celfile" ] }, { "page": "read.celfile.header", "title": "Read header information from cel file", "topics": [ "read.celfile.header" ] }, { "page": "read.celfile.probeintensity.matrices", "title": "Read PM or MM from CEL file into matrices", "topics": [ "read.celfile.probeintensity.matrices" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg+really1.3.1-1ubuntu3", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" } ], "_score": 8.883851510305401, "_indexed": true, "_nocasepkg": "affyio", "_universes": [ "bioc", "bmbolstad" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-07-23T08:13:38.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/b0d98612a3e3d342b5904c3e6ab1410c533268d2e5f6ed3cd2c493e1c29ad4c0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-07-23T08:13:41.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/8f37068370b730f5c6cb21d625abbd93fc0a496881ff896fbe93b08166161014", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.1", "os": "linux", "version": "1.83.0", "date": "2026-07-23T08:13:50.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/729f70157ba04b205e18bf51a9dbaa5bf624b7ecfbafa2c6fccd98d1c73f68f8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.1", "os": "linux", "version": "1.83.0", "date": "2026-07-23T08:14:23.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/db9da74faaea8127a69abc033e78c535e603e0d1acbe9b886c2ca15d517182d2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-07-23T08:12:30.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/edeb3b33422d8a21bc2a5382dc663297c3954329a75ef5bdc5acf8914aed8dac", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-07-23T08:14:33.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/601914c851fe68a8f5ed7dbca93f3061f4df10d0df2b88f41b20ba34fa3b23a7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.1", "os": "mac", "version": "1.83.0", "date": "2026-07-23T08:12:53.000Z", "arch": "aarch64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/d23f228dc053a5c8ccf777ccd7af84237c7011bc6a63cf88f06acfae513f2fbe", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.1", "os": "mac", "version": "1.83.0", "date": "2026-07-23T08:14:09.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/69aaf8ee138660c7af8e9f5faccc3b93f52ad26c16d3284791ca12713fbfde4c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.0", "os": "wasm", "version": "1.83.0", "date": "2026-07-23T08:13:01.000Z", "arch": "emscripten", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/40b3eaa4c7f584006ca7073e439ef4708c75a73ee73a6d595fa735047361dff3", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.7.0", "os": "win", "version": "1.83.0", "date": "2026-07-23T08:12:22.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/d4d54a80a4776af445689de41929f932c3dba99add3f645c50226298e100b217", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.5.3", "os": "win", "version": "1.83.0", "date": "2026-07-23T08:12:11.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/914f6f79ef51e4c830abafb2d32761fcc451dc6f79f0244424905e17cf163ab3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" }, { "r": "4.6.1", "os": "win", "version": "1.83.0", "date": "2026-07-23T08:12:17.000Z", "arch": "x86_64", "commit": "a6d70c8a14f414503c9650d15e41e750a0c5b3c8", "fileid": "https://r2.ropensci.org/729e6ca93e4277cc44bef20a05d763179360ae0a174694ec53a812850e79f370", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29990325491" } ] }