{ "_id": "6a193144acfb0bcc41dd123d", "Package": "affxparser", "Version": "1.85.0", "Title": "Affymetrix File Parsing SDK", "Authors@R": "c(\nperson(\"Henrik\", \"Bengtsson\", role=c(\"aut\")),\nperson(\"James\", \"Bullard\", role=c(\"aut\")),\nperson(\"Robert\", \"Gentleman\", role=c(\"ctb\")),\nperson(\"Kasper Daniel\", \"Hansen\", role=c(\"aut\", \"cre\"), email=\"kasperdanielhansen@gmail.com\"),\nperson(\"Jim\", \"Hester\", role=c(\"ctb\")),\nperson(\"Martin\", \"Morgan\", role=c(\"ctb\")))", "Author": "Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman\n[ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb],\nMartin Morgan [ctb]", "Maintainer": "Kasper Daniel Hansen ", "Description": "Package for parsing Affymetrix files (CDF, CEL, CHP,\nBPMAP, BAR). It provides methods for fast and memory efficient\nparsing of Affymetrix files using the Affymetrix' Fusion SDK.\nBoth ASCII- and binary-based files are supported. Currently,\nthere are methods for reading chip definition file (CDF) and a\ncell intensity file (CEL). These files can be read either in\nfull or in part. For example, probe signals from a few\nprobesets can be extracted very quickly from a set of CEL files\ninto a convenient list structure.", "Note": "Fusion SDK v1.1.2", "License": "LGPL (>= 2)", "LazyLoad": "yes", "URL": "https://github.com/HenrikBengtsson/affxparser", "BugReports": "https://github.com/HenrikBengtsson/affxparser/issues", "biocViews": "Infrastructure, DataImport, Microarray,\nProprietaryPlatforms, OneChannel", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:31:19 UTC", "RemoteUrl": "https://github.com/bioc/affxparser", "RemoteRef": "HEAD", "RemoteSha": "358fbacdbcd467a2a08adf5761aceb1e04db321e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-29 06:03:19 UTC", "User": "root" }, "MD5sum": "5e1714389b087854d5649223fa8067fa", "_user": "bioc", "_type": "src", "_file": "affxparser_1.85.0.tar.gz", "_fileid": "a247c066757d7e3b54e90f404513a6984f13ed208124e0c564ebd242b992dec6", "_filesize": 1098657, "_sha256": "a247c066757d7e3b54e90f404513a6984f13ed208124e0c564ebd242b992dec6", "_created": "2026-05-29T06:03:19.000Z", "_published": "2026-05-29T06:25:08.679Z", "_jobs": [ { "job": 78447019663, "time": 192, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7284220391" }, { "job": 78447019639, "time": 202, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "7284222474" }, { "job": 78447019654, "time": 246, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7284231661" }, { "job": 78447019732, "time": 189, "config": "linux-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7284219650" }, { "job": 78447019650, "time": 184, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7284218519" }, { "job": 78447019655, "time": 163, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7284388377" }, { "job": 78447019638, "time": 332, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7284422795" }, { "job": 78447019668, "time": 187, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7284393547" }, { "job": 78447019689, "time": 426, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7284449437" }, { "job": 78446677222, "time": 189, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7284179058" }, { "job": 78447019661, "time": 129, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78447019653, "time": 465, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7284278981" }, { "job": 78447019724, "time": 454, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7284276342" }, { "job": 78447019669, "time": 436, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7284272522" } ], "_bioccheck": { "error": 2, "warning": 1, "note": 17 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26620995899", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/affxparser", "_commit": { "id": "358fbacdbcd467a2a08adf5761aceb1e04db321e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379479 }, "_maintainer": { "name": "Kasper Daniel Hansen", "email": "kasperdanielhansen@gmail.com", "login": "kasperdanielhansen", "description": "Associate professor in Biostatistiscs @jhu. Research in statistical genomics.", "uuid": 4956575 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.14.0", "role": "Depends" }, { "package": "R.oo", "version": ">= 1.22.0", "role": "Suggests" }, { "package": "R.utils", "version": ">= 2.7.0", "role": "Suggests" }, { "package": "AffymetrixDataTestFiles", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 14, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "dataimport", "microarray", "proprietaryplatforms", "onechannel", "bioconductor", "cpp" ], "_stars": 8, "_contributors": [ { "user": "henrikbengtsson", "count": 327, "uuid": 1616850 }, { "user": "dtenenba", "count": 24, "uuid": 2286826 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 10, "uuid": 1744257 }, { "user": "kasperdanielhansen", "count": 9, "uuid": 4956575 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "link-ny", "count": 1, "uuid": 4392950 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 3155, "source": "https://www.bioconductor.org/packages/stats/bioc/affxparser" }, "_mentions": 13, "_devurl": "https://github.com/henrikbengtsson/affxparser", "_searchresults": 88, "_rbuild": "4.6.0", "_assets": [ "extra/affxparser.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/henrikbengtsson/affxparser", "_realowner": "bioc", "_cranurl": false, "_exports": [ "applyCdfBlocks", "applyCdfGroupFields", "applyCdfGroups", "arrangeCelFilesByChipType", "cdfAddBaseMmCounts", "cdfAddPlasqTypes", "cdfAddProbeOffsets", "cdfGetFields", "cdfGetGroups", "cdfGtypeCelToPQ", "cdfHeaderToCelHeader", "cdfMergeAlleles", "cdfMergeStrands", "cdfMergeToQuartets", "cdfOrderBy", "cdfOrderColumnsBy", "cdfSetDimension", "compareCdfs", "compareCels", "convertCdf", "convertCel", "copyCel", "createCel", "findCdf", "findFiles", "invertMap", "isCelFile", "parseDatHeaderString", "readBpmap", "readBpmapHeader", "readBpmapSeqinfo", "readCcg", "readCcgHeader", "readCdf", "readCdfCellIndices", "readCdfDataFrame", "readCdfGroupNames", "readCdfHeader", "readCdfIsPm", "readCdfNbrOfCellsPerUnitGroup", "readCdfQc", "readCdfUnitNames", "readCdfUnits", "readCdfUnitsWriteMap", "readCel", "readCelHeader", "readCelIntensities", "readCelRectangle", "readCelUnits", "readChp", "readClf", "readClfEnv", "readClfHeader", "readPgf", "readPgfEnv", "readPgfHeader", "tpmap2bpmap", "updateCel", "updateCelUnits", "writeCdf", "writeCdfHeader", "writeCdfQcUnits", "writeCdfUnits", "writeCelHeader", "writeTpmap" ], "_help": [ { "page": "affxparser-package", "title": "Package affxparser", "topics": [ "affxparser-package", "affxparser" ] }, { "page": "1._Dictionary", "title": "1. 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