{ "_id": "6a49410118cdde069385de08", "Package": "a4Core", "Type": "Package", "Title": "Automated Affymetrix Array Analysis Core Package", "Version": "1.61.0", "Date": "2020-10-14", "Authors@R": "c(\nperson(given = \"Willem\", family = \"Talloen\", role = \"aut\"),\nperson(given = \"Tobias\", family = \"Verbeke\", role = \"aut\", email = \"tobias.verbeke@openanalytics.eu\"),\nperson(given = \"Laure\", family = \"Cougnaud\", role = \"cre\", email = \"laure.cougnaud@openanalytics.eu\")\n)", "Description": "Utility functions for the Automated Affymetrix Array\nAnalysis set of packages.", "License": "GPL-3", "biocViews": "Microarray, Classification", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:35:23 UTC", "RemoteUrl": "https://github.com/bioc/a4Core", "RemoteRef": "HEAD", "RemoteSha": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 07:14:43 UTC", "User": "root" }, "Author": "Willem Talloen [aut],\nTobias Verbeke [aut],\nLaure Cougnaud [cre]", "Maintainer": "Laure Cougnaud ", "_user": "bioc", "_type": "src", "_file": "a4Core_1.61.0.tar.gz", "_fileid": "https://r2.ropensci.org/eb28c8933d862b1c33a81dfe9f2c01b10eab973ba21c25a7f43d1d2dffe1bcb2", "_filesize": 96631, "_sha256": "eb28c8933d862b1c33a81dfe9f2c01b10eab973ba21c25a7f43d1d2dffe1bcb2", "_expires": "2026-10-12T17:21:03.000Z", "_created": "2026-07-04T07:14:43.000Z", "_published": "2026-07-04T17:21:05.338Z", "_bioccheck": { "error": 1, "warning": 1, "note": 7 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525", "_status": "success", "_upstream": "https://github.com/bioc/a4Core", "_commit": { "id": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379723 }, "_maintainer": { "name": "Laure Cougnaud", "email": "laure.cougnaud@openanalytics.eu", "login": "lcougnaud", "description": "", "uuid": 15339154 }, "_distro": "resolute", "_jobs": [ { "job": 85151722140, "time": 160, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8079512465" }, { "job": 85151722193, "time": 174, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8079514196" }, { "job": 85151722250, "time": 204, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8079518069" }, { "job": 85151722184, "time": 99, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8079913483" }, { "job": 85151722146, "time": 106, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8079907628" }, { "job": 85151721998, "time": 175, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8079490428" }, { "job": 85151722189, "time": 147, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8079510954" }, { "job": 85151722166, "time": 86, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8079502568" }, { "job": 85151722147, "time": 94, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8079503590" }, { "job": 85151722150, "time": 89, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8079503086" } ], "_registered": true, "_dependencies": [ { "package": "Biobase", "role": "Imports" }, { "package": "glmnet", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 4, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.61.0", "bioc": "3.24" }, { "branch": "release", "version": "1.60.0", "bioc": "3.23" } ], "_topics": [ "microarray", "classification" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/a4Core.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "confusionMatrix", "simulateData", "topTable" ], "_help": [ { "page": "confusionMatrix", "title": "Generic function to produce a confusion matrix (related to a classification problem)", "topics": [ "confusionMatrix" ] }, { "page": "simulateData", "title": "Simulate Data for Package Testing and Demonstration Purposes", "topics": [ "simulateData" ] }, { "page": "topTable", "title": "S4 Generic for obtaining a top table", "topics": [ "topTable" ] }, { "page": "topTable-methods", "title": "Methods for topTable", "topics": [ "topTable,elnet-method", "topTable,glmnet-method", "topTable,lognet-method", "topTable-methods" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "codetools", "foreach", "generics", "glmnet", "iterators", "lattice", "Matrix", "Rcpp", "RcppEigen", "shape", "survival" ], "_vignettes": [ { "source": "a4Core-vignette.Rmd", "filename": "a4Core-vignette.html", "title": "Vignette of the a4Core package", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Simulate data", "Top tables utility functions for classification", "Appendix", "Session information" ], "created": "2020-10-14 16:41:31", "modified": "2020-10-14 17:20:09", "commits": 3 } ], "_score": 4.380211241711606, "_indexed": true, "_nocasepkg": "a4core", "_universes": [ "bioc", "lcougnaud" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.61.0", "date": "2026-07-04T07:17:18.000Z", "distro": "resolute", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/a6166453d6f6d37a1bc8c93d68abd469e1a0f11d6fb1359f212bf73a6e28c30d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.6.1", "os": "linux", "version": "1.61.0", "date": "2026-07-04T07:17:51.000Z", "distro": "resolute", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/1c052f30bbef74c93f6911912ff3ce48dfb4a43b461caa830c8e1e5f21aa597d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.5.3", "os": "mac", "version": "1.61.0", "date": "2026-07-04T08:10:46.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/7911e61bfd86fc314f283014fb14272903d73ed225aa415de20983f0a0ff2b0b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.6.1", "os": "mac", "version": "1.61.0", "date": "2026-07-04T08:09:57.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/2c4aac80e107f01e98293d4457389fc65579da85c00e8491bd6d3cb560fcd0a0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.6.0", "os": "wasm", "version": "1.61.0", "date": "2026-07-04T07:17:25.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/bea5a997c30c9d9dfef6866d829b392da4785cd85b4c7adbfd6854b74a898cea", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.7.0", "os": "win", "version": "1.61.0", "date": "2026-07-04T07:15:51.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/8b71f1ac89aace48f3c417165731e0b4c19a546e5a5c4287ac64f85d8a9f7442", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.5.3", "os": "win", "version": "1.61.0", "date": "2026-07-04T07:15:54.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/24eb8bce72236fd0e00f6280367c227ee70e80022292439d9cecfd5b7f723a41", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" }, { "r": "4.6.1", "os": "win", "version": "1.61.0", "date": "2026-07-04T07:15:51.000Z", "commit": "bab9e56cd7c96afb1dd34cfbc7c8efb79ae60831", "fileid": "https://r2.ropensci.org/777805724c19f179b780f6c084f9e9597cc0ca20fbb1b74ca16a46c9394edefb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28698743525" } ] }