{
  "_id": "6ad9bd35db07788da70aa084",
  "Package": "a4Classif",
  "Type": "Package",
  "Title": "Automated Affymetrix Array Analysis Classification Package",
  "Version": "1.61.0",
  "Date": "2021-07-13",
  "Authors@R": "c(\nperson(given = \"Willem\", family = \"Talloen\", role = \"aut\"),\nperson(given = \"Tobias\", family = \"Verbeke\", role = \"aut\", email = \"tobias.verbeke@openanalytics.eu\"),\nperson(given = \"Laure\", family = \"Cougnaud\", role = \"cre\", email = \"laure.cougnaud@openanalytics.eu\")\n)",
  "Description": "Functionalities for classification of Affymetrix\nmicroarray data, integrating within the Automated Affymetrix\nArray Analysis set of packages.",
  "License": "GPL-3",
  "biocViews": "Microarray, GeneExpression, Classification",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.1",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:22 UTC",
  "RemoteUrl": "https://github.com/bioc/a4Classif",
  "RemoteRef": "HEAD",
  "RemoteSha": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-22 07:28:14 UTC",
    "User": "root"
  },
  "Author": "Willem Talloen [aut],\nTobias Verbeke [aut],\nLaure Cougnaud [cre]",
  "Maintainer": "Laure Cougnaud <laure.cougnaud@openanalytics.eu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "a4Classif_1.61.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/b6b25e2020378ad1d506bb16bb36421654a78e6b10eba0f1235318ed7148c34e",
  "_filesize": 424527,
  "_sha256": "b6b25e2020378ad1d506bb16bb36421654a78e6b10eba0f1235318ed7148c34e",
  "_expires": "2027-01-30T07:37:23.000Z",
  "_created": "2026-10-22T07:28:14.000Z",
  "_published": "2026-10-22T07:37:25.342Z",
  "_upstream": "https://github.com/bioc/a4Classif",
  "_status": "success",
  "_maintainer": {
    "name": "Laure Cougnaud",
    "email": "laure.cougnaud@openanalytics.eu",
    "login": "lcougnaud",
    "description": "",
    "uuid": 15339154
  },
  "_jobs": [
    {
      "job": 119697090855,
      "time": 166,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12409745404"
    },
    {
      "job": 119697090953,
      "time": 287,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12409690964"
    },
    {
      "job": 119697090928,
      "time": 229,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12408853347"
    },
    {
      "job": 119697090904,
      "time": 171,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12408819471"
    },
    {
      "job": 119697090863,
      "time": 147,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12408843267"
    },
    {
      "job": 119694424437,
      "time": 425,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12408723299"
    },
    {
      "job": 119697091432,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12409560620"
    },
    {
      "job": 119697090973,
      "time": 491,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12409222141"
    },
    {
      "job": 119697090984,
      "time": 487,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12409341680"
    },
    {
      "job": 119697091000,
      "time": 502,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12410041003"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 7
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304",
  "_commit": {
    "id": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379722
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "a4Core",
      "role": "Depends"
    },
    {
      "package": "a4Preproc",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "ROCR",
      "role": "Imports"
    },
    {
      "package": "pamr",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "varSelRF",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2.db",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.61.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.60.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "microarray",
    "geneexpression",
    "classification"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 479,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 604,
    "source": "https://www.bioconductor.org/packages/stats/bioc/a4Classif"
  },
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/a4Classif.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "lassoClass",
    "pamClass",
    "rfClass",
    "ROCcurve",
    "topTable"
  ],
  "_help": [
    {
      "page": "lassoClass",
      "title": "Classify using the Lasso",
      "topics": [
        "lassoClass"
      ]
    },
    {
      "page": "pamClass",
      "title": "Classify using Prediction Analysis for MicroArrays",
      "topics": [
        "pamClass"
      ]
    },
    {
      "page": "rfClass",
      "title": "Classify using Random Forests",
      "topics": [
        "rfClass"
      ]
    },
    {
      "page": "ROCcurve",
      "title": "Receiver operating curve",
      "topics": [
        "ROCcurve"
      ]
    },
    {
      "page": "topTable-pamClass-method",
      "title": "Top table for 'pamClass' object",
      "topics": [
        "topTable,pamClass-method"
      ]
    },
    {
      "page": "topTable-rfClass-method",
      "title": "Top table for 'rfClass' object",
      "topics": [
        "topTable,rfClass-method"
      ]
    }
  ],
  "_rundeps": [
    "a4Core",
    "a4Preproc",
    "Biobase",
    "BiocGenerics",
    "bitops",
    "caTools",
    "cluster",
    "codetools",
    "foreach",
    "generics",
    "glmnet",
    "gplots",
    "gtools",
    "iterators",
    "KernSmooth",
    "lattice",
    "Matrix",
    "pamr",
    "randomForest",
    "Rcpp",
    "RcppEigen",
    "ROCR",
    "shape",
    "survival",
    "varSelRF"
  ],
  "_vignettes": [
    {
      "source": "a4Classif-vignette.Rmd",
      "filename": "a4Classif-vignette.html",
      "title": "Vignette of the a4Classif package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Classify microarray data",
        "Lasso regression",
        "PAM regression",
        "Random forest",
        "ROC curve",
        "Appendix",
        "Session information"
      ],
      "created": "2020-10-15 17:04:04",
      "modified": "2021-07-13 09:30:14",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "a4classif",
  "_universes": [
    "bioc",
    "lcougnaud"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-22T07:32:28.000Z",
      "distro": "resolute",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/fed69de951c93972b1daebcd5bae63c2de891cb3cc00c383f686dc86543b3b1f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-22T07:31:35.000Z",
      "distro": "resolute",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/2c85677ec9af48428e9e6321049e2080fb85bdfd7a38c45f5b85b31fced3d77f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-22T07:30:31.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/2fb01cae6faaf39337a00f1796a7de9940db865f4e6ae39efda4aebe2b306c95",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-22T07:30:19.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/bca19c8843672f852bc9946841e354d0ab9d296e7886e7de4d9da2d2b5842584",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.61.0",
      "date": "2026-10-22T07:30:40.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/2df0b3616fb5f086c1ee8a3ea5f0db22c715b9b4055fb5e0d00c1ba993d4208b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-22T07:35:43.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/4e8fad6fa9e15beedfd1c5c4c98a26a95c13cc24f409812e85ea747f7194f9ca",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-22T07:35:49.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/fa8956587016f010244c682a38fb33deb77a785b22bc061254a965e762c4b05e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-22T07:36:00.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "https://r2.ropensci.org/2dc5fe5b7ac938587150df69da7a0d5ab74c8b448673b019ddf4a288ed126382",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39739894304"
    }
  ]
}