{
  "_id": "6a2126ddcd65a98ecbd21354",
  "Package": "a4Classif",
  "Type": "Package",
  "Title": "Automated Affymetrix Array Analysis Classification Package",
  "Version": "1.61.0",
  "Date": "2021-07-13",
  "Authors@R": "c(\nperson(given = \"Willem\", family = \"Talloen\", role = \"aut\"),\nperson(given = \"Tobias\", family = \"Verbeke\", role = \"aut\", email = \"tobias.verbeke@openanalytics.eu\"),\nperson(given = \"Laure\", family = \"Cougnaud\", role = \"cre\", email = \"laure.cougnaud@openanalytics.eu\")\n)",
  "Description": "Functionalities for classification of Affymetrix\nmicroarray data, integrating within the Automated Affymetrix\nArray Analysis set of packages.",
  "License": "GPL-3",
  "biocViews": "Microarray, GeneExpression, Classification",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.1",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:22 UTC",
  "RemoteUrl": "https://github.com/bioc/a4Classif",
  "RemoteRef": "HEAD",
  "RemoteSha": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 07:09:50 UTC",
    "User": "root"
  },
  "Author": "Willem Talloen [aut],\nTobias Verbeke [aut],\nLaure Cougnaud [cre]",
  "Maintainer": "Laure Cougnaud <laure.cougnaud@openanalytics.eu>",
  "MD5sum": "f63f2c53f3c47af8f20a0ba2f2ff56d6",
  "_user": "bioc",
  "_type": "src",
  "_file": "a4Classif_1.61.0.tar.gz",
  "_fileid": "13507f72a6eed9b3cb7d1ca46b3e4fea99d95b420da62326896e0abf18bcdb48",
  "_filesize": 430828,
  "_sha256": "13507f72a6eed9b3cb7d1ca46b3e4fea99d95b420da62326896e0abf18bcdb48",
  "_created": "2026-06-04T07:09:50.000Z",
  "_published": "2026-06-04T07:18:53.492Z",
  "_jobs": [
    {
      "job": 79467950309,
      "time": 176,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7405237040"
    },
    {
      "job": 79467950320,
      "time": 255,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7405259403"
    },
    {
      "job": 79467950218,
      "time": 235,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7405253483"
    },
    {
      "job": 79467950241,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7405232380"
    },
    {
      "job": 79467950222,
      "time": 150,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7405229738"
    },
    {
      "job": 79467369732,
      "time": 258,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405187237"
    },
    {
      "job": 79467950184,
      "time": 154,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405231089"
    },
    {
      "job": 79467950239,
      "time": 479,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7405320447"
    },
    {
      "job": 79467950216,
      "time": 506,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7405328217"
    },
    {
      "job": 79467950230,
      "time": 428,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7405307033"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 8
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/a4Classif",
  "_commit": {
    "id": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379722
  },
  "_maintainer": {
    "name": "Laure Cougnaud",
    "email": "laure.cougnaud@openanalytics.eu",
    "login": "lcougnaud",
    "description": "",
    "uuid": 15339154
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "a4Core",
      "role": "Depends"
    },
    {
      "package": "a4Preproc",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "ROCR",
      "role": "Imports"
    },
    {
      "package": "pamr",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "varSelRF",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2.db",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.61.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.60.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "geneexpression",
    "classification"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 504,
    "source": "https://www.bioconductor.org/packages/stats/bioc/a4Classif"
  },
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/a4Classif.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "lassoClass",
    "pamClass",
    "rfClass",
    "ROCcurve",
    "topTable"
  ],
  "_help": [
    {
      "page": "lassoClass",
      "title": "Classify using the Lasso",
      "topics": [
        "lassoClass"
      ]
    },
    {
      "page": "pamClass",
      "title": "Classify using Prediction Analysis for MicroArrays",
      "topics": [
        "pamClass"
      ]
    },
    {
      "page": "rfClass",
      "title": "Classify using Random Forests",
      "topics": [
        "rfClass"
      ]
    },
    {
      "page": "ROCcurve",
      "title": "Receiver operating curve",
      "topics": [
        "ROCcurve"
      ]
    },
    {
      "page": "topTable-pamClass-method",
      "title": "Top table for 'pamClass' object",
      "topics": [
        "topTable,pamClass-method"
      ]
    },
    {
      "page": "topTable-rfClass-method",
      "title": "Top table for 'rfClass' object",
      "topics": [
        "topTable,rfClass-method"
      ]
    }
  ],
  "_rundeps": [
    "a4Core",
    "a4Preproc",
    "Biobase",
    "BiocGenerics",
    "bitops",
    "caTools",
    "cluster",
    "codetools",
    "foreach",
    "generics",
    "glmnet",
    "gplots",
    "gtools",
    "iterators",
    "KernSmooth",
    "lattice",
    "Matrix",
    "pamr",
    "randomForest",
    "Rcpp",
    "RcppEigen",
    "ROCR",
    "shape",
    "survival",
    "varSelRF"
  ],
  "_vignettes": [
    {
      "source": "a4Classif-vignette.Rmd",
      "filename": "a4Classif-vignette.html",
      "title": "Vignette of the a4Classif package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Classify microarray data",
        "Lasso regression",
        "PAM regression",
        "Random forest",
        "ROC curve",
        "Appendix",
        "Session information"
      ],
      "created": "2020-10-15 17:04:04",
      "modified": "2021-07-13 09:30:14",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "a4classif",
  "_universes": [
    "bioc",
    "lcougnaud"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-06-04T07:13:33.000Z",
      "distro": "noble",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "74d926e950f450dbab1920f6452cafe45937009b9c90bf3bc3461cbfad3622d6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-06-04T07:13:15.000Z",
      "distro": "noble",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "5711f938e6364de7f7643b6a2946d6fa1d77452134b33c387c90026d21329235",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-06-04T07:12:12.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "f1b3affadcde6247c15ffb8ec2e6edf530044beb7ffee7a60feec5c709fe5560",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-06-04T07:12:00.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "bda452074e564b5b06e351125c4222c8bd0330d0bfef1dfda9f0a972871897c8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.61.0",
      "date": "2026-06-04T07:12:44.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "0f808253db1a014ffbf655cd33ff828c4a5c2e0c48f116ffa1a585de3952e107",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-06-04T07:17:09.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "2be387f7c654a9bd3771b3243201dc1cb655733229a6073e6bdfdda27297f7bd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-06-04T07:17:41.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "c5f02b032a8cc88c9ae7f50cfbb81ab37b5f3f63bfd370f14c32077e41c760d1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-06-04T07:16:29.000Z",
      "commit": "e8a308b135018e5b844bb60f7457ca195ac94ba1",
      "fileid": "033979692a0e6c007e6cfe91133740de4aaea0b2e76437fb332e30df2819c251",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936468117"
    }
  ]
}