{
  "_id": "6abe479499f7aa8c6aa54b12",
  "Package": "XDE",
  "Title": "XDE: a Bayesian hierarchical model for cross-study analysis of\ndifferential gene expression",
  "Version": "2.59.0",
  "Date": "2020-09-01",
  "Author": "R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland",
  "Description": "Multi-level model for cross-study detection of\ndifferential gene expression.",
  "Maintainer": "Robert Scharpf <rscharpf@jhsph.edu>",
  "License": "LGPL-2",
  "Collate": "functions.R AllClasses.R AllGenerics.R RUpdates.R\nmethods-XdeParameter.R methods-matrix.R methods-data.frame.R\nmethods-ExpressionSet.R methods-ExpressionSetList.R\nmethods-mergeExpressionSet.R methods-Parameters.R\nmethods-XdeMcmc.R xde.R zzz.R",
  "LazyLoad": "yes",
  "biocViews": "Microarray, DifferentialExpression",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:32:41 UTC",
  "RemoteUrl": "https://github.com/bioc/XDE",
  "RemoteRef": "HEAD",
  "RemoteSha": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-01 11:32:37 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "XDE_2.59.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6acf20c2308abe959ebada1db18c9b14cd6604d0028cfd8ba5a5198dd3b56a17",
  "_filesize": 1307935,
  "_sha256": "6acf20c2308abe959ebada1db18c9b14cd6604d0028cfd8ba5a5198dd3b56a17",
  "_expires": "2027-01-09T11:44:18.000Z",
  "_created": "2026-10-01T11:32:37.000Z",
  "_published": "2026-10-01T11:44:19.961Z",
  "_bioccheck": {
    "error": 2,
    "warning": 9,
    "note": 14
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015",
  "_status": "success",
  "_upstream": "https://github.com/bioc/XDE",
  "_commit": {
    "id": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379561
  },
  "_maintainer": {
    "name": "Robert Scharpf",
    "email": "rscharpf@jhsph.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 110348946212,
      "time": 159,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11157693738"
    },
    {
      "job": 110348946399,
      "time": 259,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11158973110"
    },
    {
      "job": 110348946368,
      "time": 414,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11158233831"
    },
    {
      "job": 110348946254,
      "time": 238,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11158573283"
    },
    {
      "job": 110348946482,
      "time": 306,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11159193086"
    },
    {
      "job": 110348946391,
      "time": 213,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11158424370"
    },
    {
      "job": 110348946237,
      "time": 478,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11158044575"
    },
    {
      "job": 110348946302,
      "time": 219,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11158204412"
    },
    {
      "job": 110348946326,
      "time": 534,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11158444445"
    },
    {
      "job": 110347040618,
      "time": 337,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11158083043"
    },
    {
      "job": 110348946257,
      "time": 146,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11157733670"
    },
    {
      "job": 110348946322,
      "time": 535,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11158549231"
    },
    {
      "job": 110348946353,
      "time": 295,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11157963903"
    },
    {
      "job": 110348946338,
      "time": 232,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11158148557"
    },
    {
      "job": 110348946374,
      "time": 368,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11159028567"
    },
    {
      "job": 110348946463,
      "time": 296,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11159013216"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "version": ">= 2.5.5",
      "role": "Depends"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "genefilter",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "gtools",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "GeneMeta",
      "role": "Imports"
    },
    {
      "package": "siggenes",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "coda",
      "role": "Enhances"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.59.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.58.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "differentialexpression",
    "cpp"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 471,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 682,
    "source": "https://www.bioconductor.org/packages/stats/bioc/XDE"
  },
  "_mentions": 4,
  "_searchresults": 13,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/XDE.html"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".standardizedDelta",
    "bayesianEffectSize",
    "bayesianEffectSize<-",
    "burnin",
    "burnin<-",
    "calculateBayesianEffectSize",
    "calculatePosteriorAvg",
    "coerce",
    "directory",
    "directory<-",
    "empiricalStart",
    "featureData",
    "featureNames",
    "firstMcmc",
    "firstMcmc<-",
    "geneCenter",
    "hyperparameters",
    "hyperparameters<-",
    "initialize",
    "iterations",
    "iterations<-",
    "lapply",
    "lastMcmc",
    "lastMcmc<-",
    "notes",
    "nrow",
    "nSamples",
    "output",
    "output<-",
    "pData",
    "phenotypeLabel",
    "phenotypeLabel<-",
    "plot",
    "posteriorAvg",
    "posteriorAvg<-",
    "savedIterations",
    "seed",
    "seed<-",
    "show",
    "showIterations",
    "showIterations<-",
    "ssStatistic",
    "standardizeSamples",
    "studyCenter",
    "studyNames",
    "studyNames<-",
    "symbolsInteresting",
    "thin",
    "thin<-",
    "tuning",
    "tuning<-",
    "updates",
    "updates<-",
    "xde",
    "xsScores",
    "zeroNu"
  ],
  "_datasets": [
    {
      "name": "expressionSetList",
      "title": "Example of ExpressionSetList",
      "object": "expressionSetList",
      "file": "expressionSetList.RData",
      "class": [
        "ExpressionSetList"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "xmcmc",
      "title": "Object of class XdeMcmc",
      "object": "xmcmc",
      "file": "xmcmc.RData",
      "class": [
        "XdeMcmc"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "burnin",
      "title": "Indicator for running a MCMC burnin",
      "topics": [
        "burnin",
        "burnin<-"
      ]
    },
    {
      "page": "calculatePosteriorAvg",
      "title": "Calculate the posterior average for indicators of concordant and discordant differential expression",
      "topics": [
        "calculatePosteriorAvg"
      ]
    },
    {
      "page": "empiricalStart",
      "title": "Empirical starting values for the MCMC",
      "topics": [
        "empiricalStart"
      ]
    },
    {
      "page": "expressionSetList",
      "title": "Example of ExpressionSetList",
      "topics": [
        "expressionSetList"
      ]
    },
    {
      "page": "ExpressionSetList-class",
      "title": "A class for containing a list of ExpressionSets",
      "topics": [
        "coerce,list,ExpressionSetList-method",
        "dim,ExpressionSetList-method",
        "ExpressionSetList-class",
        "featureNames,ExpressionSetList-method",
        "geneCenter,ExpressionSetList-method",
        "lapply,ExpressionSetList-method",
        "nrow,ExpressionSetList-method",
        "nSamples",
        "nSamples,ExpressionSetList-method",
        "pca,ExpressionSetList-method",
        "pData,ExpressionSetList-method",
        "phenotype,ExpressionSetList,character-method",
        "standardizeSamples,ExpressionSetList-method",
        "studyCenter,ExpressionSetList-method",
        "zeroNu,ExpressionSetList-method",
        "[,ExpressionSetList-method"
      ]
    },
    {
      "page": "ExpressionSetList-methods",
      "title": "Methods for ExpressionSetList",
      "topics": [
        "ExpressionSetList-methods",
        "phenotype",
        "[,ExpressionSetList,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "firstMcmc",
      "title": "Values for the first MCMC iteration",
      "topics": [
        "firstMcmc",
        "firstMcmc<-"
      ]
    },
    {
      "page": "geneCenter",
      "title": "Center the expression values for each gene in a study to zero",
      "topics": [
        "geneCenter"
      ]
    },
    {
      "page": "hyperparameters",
      "title": "Accessor for hyperparameters of the Bayesian model",
      "topics": [
        "hyperparameters",
        "hyperparameters<-"
      ]
    },
    {
      "page": "iterations",
      "title": "Number of MCMC iterations",
      "topics": [
        "iterations",
        "iterations<-"
      ]
    },
    {
      "page": "lastMcmc",
      "title": "MCMC values for the last iteration",
      "topics": [
        "lastMcmc",
        "lastMcmc<-"
      ]
    },
    {
      "page": "output",
      "title": "Options for storing results of the MCMC chains",
      "topics": [
        "output",
        "output<-"
      ]
    },
    {
      "page": "pairs",
      "title": "pairs function for high-throughput data",
      "topics": [
        "pairs,data.frame-method",
        "pairs,matrix-method",
        "pairs-methods"
      ]
    },
    {
      "page": "Parameters-class",
      "title": "Container for XDE parameters",
      "topics": [
        "$,Parameters-method",
        "$<-,Parameters-method",
        "coerce,XdeParameter,Parameters-method",
        "Parameters-class",
        "show,Parameters-method",
        "[[,Parameters-method",
        "[[<-,Parameters-method"
      ]
    },
    {
      "page": "posteriorAvg",
      "title": "Accessor and replacement methods for posterior averages of differential expression",
      "topics": [
        "posteriorAvg",
        "posteriorAvg<-"
      ]
    },
    {
      "page": "seed",
      "title": "Seed for the MCMC",
      "topics": [
        "seed",
        "seed<-"
      ]
    },
    {
      "page": "ssStatistic",
      "title": "Calculate single study estimates of effect size",
      "topics": [
        "ssStatistic"
      ]
    },
    {
      "page": "standardizeSamples",
      "title": "Centers the genes at zero and standardizes the samples to have variance 1",
      "topics": [
        "standardizeSamples"
      ]
    },
    {
      "page": "studyCenter",
      "title": "Center the expression values in a study to zero",
      "topics": [
        "studyCenter"
      ]
    },
    {
      "page": "symbolsInteresting",
      "title": "Useful for changing the look of pairs plots to emphasize concordant or discordant genes",
      "topics": [
        "symbolsInteresting"
      ]
    },
    {
      "page": "thin",
      "title": "How often to write MCMC iterations to file",
      "topics": [
        "thin",
        "thin<-"
      ]
    },
    {
      "page": "tuning",
      "title": "Tuning parameters for Metropolis-Hastings proposals",
      "topics": [
        "tuning",
        "tuning<-"
      ]
    },
    {
      "page": "updates",
      "title": "Frequency of updating a parameter per MCMC iteration",
      "topics": [
        "updates",
        "updates<-"
      ]
    },
    {
      "page": "xde",
      "title": "Fit the Bayesian hierarchical model for cross-study differential gene expression",
      "topics": [
        "xde"
      ]
    },
    {
      "page": "XdeMcmc-class",
      "title": "Class for storing output from the Bayesian model",
      "topics": [
        "$",
        "$,XdeMcmc-method",
        ".standardizedDelta,XdeMcmc-method",
        "bayesianEffectSize",
        "bayesianEffectSize,XdeMcmc-method",
        "bayesianEffectSize<-",
        "bayesianEffectSize<-,XdeMcmc,matrix-method",
        "calculateBayesianEffectSize",
        "calculateBayesianEffectSize,XdeMcmc-method",
        "calculatePosteriorAvg,XdeMcmc-method",
        "directory",
        "directory,XdeMcmc-method",
        "featureNames,XdeMcmc-method",
        "initialize,XdeMcmc-method",
        "iterations,XdeMcmc-method",
        "lastMcmc,XdeMcmc-method",
        "nrow,XdeMcmc-method",
        "output,XdeMcmc-method",
        "plot,XdeMcmc,ANY-method",
        "plot,XdeMcmc-method",
        "posteriorAvg,XdeMcmc-method",
        "posteriorAvg<-,XdeMcmc,matrix-method",
        "seed,XdeMcmc-method",
        "show,XdeMcmc-method",
        "studyNames,XdeMcmc-method",
        "XdeMcmc-class"
      ]
    },
    {
      "page": "XdeParameter-class",
      "title": "Container class for storing options of the Bayesian hierarchical model",
      "topics": [
        "burnin,XdeParameter-method",
        "burnin<-,XdeParameter,logical-method",
        "coerce,XdeParameter,Params-method",
        "directory,XdeParameter-method",
        "directory<-",
        "directory<-,XdeParameter-method",
        "firstMcmc,XdeParameter-method",
        "firstMcmc<-,XdeParameter,environment-method",
        "firstMcmc<-,XdeParameter,list-method",
        "hyperparameters,XdeParameter-method",
        "hyperparameters<-,XdeParameter-method",
        "initialize,XdeParameter-method",
        "iterations,XdeParameter-method",
        "iterations<-,XdeParameter,integer-method",
        "iterations<-,XdeParameter,numeric-method",
        "output,XdeParameter-method",
        "output<-,XdeParameter-method",
        "phenotypeLabel",
        "phenotypeLabel,XdeParameter-method",
        "phenotypeLabel<-",
        "phenotypeLabel<-,XdeParameter,character-method",
        "savedIterations",
        "savedIterations,XdeParameter-method",
        "seed,XdeParameter-method",
        "seed<-,XdeParameter,integer-method",
        "seed<-,XdeParameter,numeric-method",
        "show,XdeParameter-method",
        "showIterations",
        "showIterations,XdeParameter-method",
        "showIterations<-",
        "showIterations<-,XdeParameter-method",
        "studyNames",
        "studyNames,XdeParameter-method",
        "studyNames<-",
        "studyNames<-,XdeParameter-method",
        "thin,XdeParameter-method",
        "thin<-,XdeParameter,numeric-method",
        "tuning,XdeParameter-method",
        "tuning<-,XdeParameter-method",
        "updates,XdeParameter-method",
        "updates<-,XdeParameter-method",
        "XdeParameter-class"
      ]
    },
    {
      "page": "xmcmc",
      "title": "Object of class XdeMcmc",
      "topics": [
        "xmcmc"
      ]
    },
    {
      "page": "xsScores",
      "title": "Alternative cross-study scores of differential expression",
      "topics": [
        "xsScores"
      ]
    },
    {
      "page": "zeroNu",
      "title": "Option for not modeling Nu",
      "topics": [
        "zeroNu"
      ]
    }
  ],
  "_rundeps": [
    "annotate",
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "fastmap",
    "genefilter",
    "GeneMeta",
    "generics",
    "glue",
    "gtools",
    "httr",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "multtest",
    "mvtnorm",
    "openssl",
    "pkgconfig",
    "png",
    "R6",
    "RColorBrewer",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "scrime",
    "Seqinfo",
    "siggenes",
    "survival",
    "sys",
    "vctrs",
    "XML",
    "xtable",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "XDE.Rnw",
      "filename": "XDE.pdf",
      "title": "XDE Vignette",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        " The ExpressionSetList Class",
        " The XdeParameter Class",
        " Fitting the Bayesian hierarchical model",
        " MCMC diagnostics",
        " Posterior probabilities of differential expression",
        " Alternative cross-study summaries of differential expression",
        "Session Information"
      ],
      "created": "2014-04-13 09:53:50",
      "modified": "2014-04-13 09:53:50",
      "commits": 1
    },
    {
      "source": "XdeParameterClass.Rnw",
      "filename": "XdeParameterClass.pdf",
      "title": "XdeParameterClass Vignette",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        " The Stochastic Model",
        " Metropolis-Hastings algorithm",
        " The XdeParameter class",
        "Session Information"
      ],
      "created": "2014-04-13 09:53:50",
      "modified": "2014-04-13 09:53:50",
      "commits": 1
    }
  ],
  "_score": 4.318063334962762,
  "_indexed": true,
  "_nocasepkg": "xde",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.59.0",
      "date": "2026-10-01T11:36:01.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/a1ac0fdfaacda014b9d28bb32afccf00ab0d38fbb15ff17a4e05b5a885a60f25",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.59.0",
      "date": "2026-10-01T11:38:25.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/483140a72d7288bc7c1e78b85baa65e31383624c5c4474a564045f129d4554f4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.59.0",
      "date": "2026-10-01T11:35:54.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/1de362dee6bdcda59284273e99f3506a4115e0af837c01f67de7d5d441a64dff",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.59.0",
      "date": "2026-10-01T11:36:26.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/cf0ade406f594d046e414476b406c1f259eb6ac70e377280b7b83c4d5e283e90",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.59.0",
      "date": "2026-10-01T11:41:13.000Z",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/05b3b3590370e95a9f7d6ca0d059f4adf99a02882d73832506f49160edc28fcb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.59.0",
      "date": "2026-10-01T11:37:20.000Z",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/9a93f85226320a22d0dafd9df4b39009adfc77a09b42f82eef442c254f6b4746",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.59.0",
      "date": "2026-10-01T11:41:01.000Z",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/b1fb4ad1c712a3abecf22acdc0f4a35d362cf2277fc70466aa7179015eb6988a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.59.0",
      "date": "2026-10-01T11:37:50.000Z",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/675c5d3c498091a05d1865b6d9a4c98890cb83d838760af7e287b10f96ef5277",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.59.0",
      "date": "2026-10-01T11:35:47.000Z",
      "arch": "emscripten",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/0f4f89ab0c8808e62b36ee7c548685e87566b1404c1b85067781f68979aa38c5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.59.0",
      "date": "2026-10-01T11:37:45.000Z",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/7ebb9b80315d483a44d6feb413f19e54b9b2071702d62a415f4dcfa43da00f63",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.59.0",
      "date": "2026-10-01T11:34:34.000Z",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/c24c23d36ddf65c85976add53e6320533244be9fca60a75863d6e60d75617094",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.59.0",
      "date": "2026-10-01T11:34:44.000Z",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/bd726a704405e72f06c1b0683eec34c0dd055cbe48298f5aaf5a43ab273150b5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.59.0",
      "date": "2026-10-01T11:37:23.000Z",
      "arch": "aarch64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/33913e24e5caaf703f0e626749a295f5998de0f9fde298fd00346be495c69ddb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.59.0",
      "date": "2026-10-01T11:34:46.000Z",
      "arch": "x86_64",
      "commit": "c9b5dc1030afdfec95345b3f2ecd0628486ffb24",
      "fileid": "https://r2.ropensci.org/8c14f8b5b2b37c2e0468c911bc73f009fc5d37e4ce46587651649b0c3c3557f2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36855490015"
    }
  ]
}