{
  "_id": "6a12a060acfb0bcc41d10794",
  "Package": "XAItest",
  "Title": "XAItest: Enhancing Feature Discovery with eXplainable AI",
  "Version": "1.5.0",
  "Authors@R": "c(\nperson(\"Ghislain\", \"FIEVET\", , \"ghislain.fievet@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0337-7327\")),\nperson(\"Sébastien\", \"HERGALANT\", role = \"aut\",\nemail=\"sebastien.hergalant@inserm.fr\", comment=c(ORCID = \"0000-0001-8456-7992\")))",
  "Description": "XAItest is an R Package that identifies features using\neXplainable AI (XAI) methods such as SHAP or LIME. This package\nallows users to compare these methods with traditional\nstatistical tests like t-tests, empirical Bayes, and Fisher's\ntest. Additionally, it includes simThresh, a system that\nenables the comparison of feature importance with p-values by\nincorporating calibrated simulated data.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "biocViews": "Software, StatisticalMethod, FeatureExtraction,\nClassification, Regression",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/GhislainFievet/XAItest",
  "BugReports": "https://github.com/GhislainFievet/XAItest/issues",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:04:39 UTC",
  "RemoteUrl": "https://github.com/bioc/XAItest",
  "RemoteRef": "HEAD",
  "RemoteSha": "849972d05d49c678fdfbd58154a52a61933ce76a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 06:45:48 UTC",
    "User": "root"
  },
  "Author": "Ghislain FIEVET [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0337-7327>),\nSébastien HERGALANT [aut] (ORCID:\n<https://orcid.org/0000-0001-8456-7992>)",
  "Maintainer": "Ghislain FIEVET <ghislain.fievet@gmail.com>",
  "MD5sum": "2173cd421c801670e55cd9381bf73152",
  "_user": "bioc",
  "_type": "src",
  "_file": "XAItest_1.5.0.tar.gz",
  "_fileid": "ec3ae9d77e8ec2a8c11c4157ef3b23ef68a8d758668bb0b2b55dd81574349119",
  "_filesize": 765088,
  "_sha256": "ec3ae9d77e8ec2a8c11c4157ef3b23ef68a8d758668bb0b2b55dd81574349119",
  "_created": "2026-05-24T06:45:48.000Z",
  "_published": "2026-05-24T06:53:20.807Z",
  "_jobs": [
    {
      "job": 77578197586,
      "time": 217,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183002698"
    },
    {
      "job": 77578197597,
      "time": 289,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7183010219"
    },
    {
      "job": 77578197594,
      "time": 301,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183011681"
    },
    {
      "job": 77578197630,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7183023934"
    },
    {
      "job": 77578197626,
      "time": 147,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7183021152"
    },
    {
      "job": 77578032390,
      "time": 196,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7182980758"
    },
    {
      "job": 77578197584,
      "time": 146,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182995478"
    },
    {
      "job": 77578197627,
      "time": 168,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7182997612"
    },
    {
      "job": 77578197608,
      "time": 209,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7183001810"
    },
    {
      "job": 77578197653,
      "time": 127,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7182993651"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 12
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/XAItest",
  "_commit": {
    "id": "849972d05d49c678fdfbd58154a52a61933ce76a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381479
  },
  "_maintainer": {
    "name": "Ghislain FIEVET",
    "email": "ghislain.fievet@gmail.com",
    "login": "ghislainfievet",
    "description": "",
    "uuid": 13918592,
    "orcid": "0000-0002-0337-7327"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "randomForest",
      "role": "Imports"
    },
    {
      "package": "kernelshap",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "lime",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "ggforce",
      "role": "Suggests"
    },
    {
      "package": "shapr",
      "version": ">= 1.0.1",
      "role": "Suggests"
    },
    {
      "package": "airway",
      "role": "Suggests"
    },
    {
      "package": "xgboost",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-34",
      "n": 1
    },
    {
      "week": "2025-35",
      "n": 1
    },
    {
      "week": "2025-40",
      "n": 2
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.5.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.4.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "statisticalmethod",
    "featureextraction",
    "classification",
    "regression"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "ghislainfievet",
      "count": 58,
      "uuid": 13918592
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 235,
    "source": "https://www.bioconductor.org/packages/stats/bioc/XAItest"
  },
  "_devurl": "https://github.com/ghislainfievet/xaitest",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/XAItest.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ghislainfievet/xaitest",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "addSimThresh",
    "genScenario",
    "getFeatImpThresholds",
    "getMetricsTable",
    "mapPvalImportance",
    "modelsOverview",
    "plotModel",
    "setMetricsTable",
    "show",
    "XAI.test"
  ],
  "_help": [
    {
      "page": "addSimThresh",
      "title": "Add \"simThresh\" Simulated Threshold Feature",
      "topics": [
        "addSimThresh"
      ]
    },
    {
      "page": "genScenario",
      "title": "Generate benchmark scenarios for feature discovery",
      "topics": [
        "genScenario"
      ]
    },
    {
      "page": "getFeatImpThresholds",
      "title": "The getFeatImpThresholds function identifies the minimum level of feature importance required to exceed a specified significance threshold, which is determined by the p-value.",
      "topics": [
        "getFeatImpThresholds"
      ]
    },
    {
      "page": "getMetricsTable",
      "title": "Get the Metrics Table",
      "topics": [
        "getMetricsTable",
        "getMetricsTable,ObjXAI-method"
      ]
    },
    {
      "page": "mapPvalImportance",
      "title": "The mapPvalImportance function displays a datatable with color-coded cells based on significance thresholds for feature importance and p-value columns.",
      "topics": [
        "mapPvalImportance"
      ]
    },
    {
      "page": "modelsOverview",
      "title": "Models Overview",
      "topics": [
        "modelsOverview"
      ]
    },
    {
      "page": "ObjXAI",
      "title": "ObjXAI class",
      "topics": [
        ".objXAI",
        "ObjXAI-class"
      ]
    },
    {
      "page": "plotModel",
      "title": "Plot the model",
      "topics": [
        "plotModel"
      ]
    },
    {
      "page": "setMetricsTable",
      "title": "Set the Metrics Table",
      "topics": [
        "setMetricsTable",
        "setMetricsTable,ObjXAI-method"
      ]
    },
    {
      "page": "show-ObjXAI-method",
      "title": "Show Method for ObjXAI",
      "topics": [
        "show,ObjXAI-method"
      ]
    },
    {
      "page": "XAI.test",
      "title": "The XAI.test function complements t-test and correlation analyses in feature discovery by integrating eXplainable AI techniques such as feature importance, SHAP, LIME, or custom functions. It provides the option of automatic integration of simulated data to facilitate matching significance between p-values and feature importance.",
      "topics": [
        "XAI.test"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "assertthat",
    "base64enc",
    "Biobase",
    "BiocGenerics",
    "bslib",
    "cachem",
    "caret",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "crosstalk",
    "data.table",
    "DelayedArray",
    "diagram",
    "digest",
    "doFuture",
    "dplyr",
    "DT",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "foreach",
    "fs",
    "future",
    "future.apply",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glmnet",
    "globals",
    "glue",
    "gower",
    "gtable",
    "hardhat",
    "highr",
    "htmltools",
    "htmlwidgets",
    "ipred",
    "IRanges",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "kernelshap",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lava",
    "lazyeval",
    "lifecycle",
    "lime",
    "limma",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "ModelMetrics",
    "nlme",
    "nnet",
    "numDeriv",
    "otel",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "pROC",
    "prodlim",
    "progressr",
    "promises",
    "proxy",
    "purrr",
    "R6",
    "randomForest",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "recipes",
    "reshape2",
    "rlang",
    "rmarkdown",
    "rpart",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "shape",
    "SparseArray",
    "sparsevctrs",
    "SQUAREM",
    "statmod",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tinytex",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XVector",
    "yaml"
  ],
  "_score": 2.845098040014257,
  "_indexed": true,
  "_nocasepkg": "xaitest",
  "_universes": [
    "bioc",
    "ghislainfievet"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5.0",
      "date": "2026-05-24T06:49:27.000Z",
      "distro": "noble",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "5fc6e58f0fa5da19bf3645f775f4c0beb5092f5c33c7d8b819211a8b918ebfe2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.5.0",
      "date": "2026-05-24T06:49:44.000Z",
      "distro": "noble",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "1a990974c4441f5447d203b60607748055a3f92b387d728deb9d7c82eb65293f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.5.0",
      "date": "2026-05-24T06:52:00.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "ecd42b12a42922e8a2b60f242215646083a424986541c855e224fafda7688730",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.5.0",
      "date": "2026-05-24T06:51:22.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "b074f5f2ac0bfe20838f0efba47d909f3b13c0307b9207d9c11cd0e128a182eb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.5.0",
      "date": "2026-05-24T06:48:30.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "1a035c642d64a53c749cbb20c3a165bbb3d1c336d7eeeffc379dd15a6050c0bc",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.5.0",
      "date": "2026-05-24T06:47:24.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "ac02d45f1d5e068ad06c57b93421bf02e47ef033891e44545c8194eb69e6e51f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.5.0",
      "date": "2026-05-24T06:47:51.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "3371bbded001ce940a2154a78341c732cecc28f07cf2bb4cfc7c3cb4c4c8b8bc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.5.0",
      "date": "2026-05-24T06:47:10.000Z",
      "commit": "849972d05d49c678fdfbd58154a52a61933ce76a",
      "fileid": "2fe327ff642db49eb96b6c90fe08f683bc4d5f83638af7d0ee00d81b1c2b0e3a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26354273916"
    }
  ]
}