{
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  "Package": "VplotR",
  "Type": "Package",
  "Title": "Set of tools to make V-plots and compute footprint profiles",
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  "Date": "2025-07-31",
  "Encoding": "UTF-8",
  "Authors@R": "c(person(given = \"Jacques\",\nfamily = \"Serizay\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jacquesserizay@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4295-0624\")))",
  "Description": "The pattern of digestion and protection from DNA nucleases\nsuch as DNAse I, micrococcal nuclease, and Tn5 transposase can\nbe used to infer the location of associated proteins. This\npackage contains useful functions to analyze patterns of\npaired-end sequencing fragment density. VplotR facilitates the\ngeneration of V-plots and footprint profiles over single or\naggregated genomic loci of interest.",
  "URL": "https://github.com/js2264/VplotR",
  "BugReports": "https://github.com/js2264/VplotR/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "NucleosomePositioning, Coverage, Sequencing,\nBiologicalQuestion, ATACSeq, Alignment",
  "License": "GPL (>= 3)",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:53:27 UTC",
  "RemoteUrl": "https://github.com/bioc/VplotR",
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  "Author": "Jacques Serizay [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4295-0624>)",
  "Maintainer": "Jacques Serizay <jacquesserizay@gmail.com>",
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      "page": "plotVmat.Vmat",
      "title": "A function to plot a computed Vmat",
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      "page": "plotVmat.VmatList",
      "title": "A function to plot a computed VmatList",
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      "page": "REB1_sacCer3",
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      "page": "sampleGRanges.GRanges",
      "title": "A function to sample GRanges within GRanges",
      "topics": [
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    {
      "page": "shiftATACGranges",
      "title": "A function to shift GRanges fragments by 5/-4. This is useful when dealing with fragments coming from ATAC-seq.",
      "topics": [
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      ]
    },
    {
      "page": "shuffleVmat",
      "title": "A function to shuffle a Vmat",
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      "title": "Personal ggplot2 theming function, adapted from roboto-condensed at https://github.com/hrbrmstr/hrbrthemes/",
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