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  "Title": "Filtering of coding and non-coding genetic variants",
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    "readWm",
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    "resetSamples",
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    "show",
    "softFilterMatrix",
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    "spliceSiteMatricesHuman",
    "summary",
    "ThreeSpliceSiteVariants",
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    "upstream",
    "upstream<-",
    "variantConsequence",
    "variantConsequence<-",
    "VariantFilteringParam",
    "variantLocation",
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    "variantLocations",
    "variantType",
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    "width",
    "wmFilename",
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    "wmLocations<-",
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    "wmStrictLocations<-",
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      "title": "Filtering of coding and non-coding genetic variants",
      "topics": [
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        "VariantFiltering"
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    },
    {
      "page": "autosomalDominant",
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        "autosomalDominant,VariantFilteringParam-method"
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      "page": "autosomalRecessiveHeterozygous",
      "title": "Autosomal recessive inheritance analysis: Heterozygous",
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        "autosomalRecessiveHeterozygous",
        "autosomalRecessiveHeterozygous,VariantFilteringParam-method"
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    {
      "page": "autosomalRecessiveHomozygous",
      "title": "Autosomal recessive inheritance analysis: Homozygous",
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        "autosomalRecessiveHomozygous",
        "autosomalRecessiveHomozygous,VariantFilteringParam-method"
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    {
      "page": "deNovo",
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        "deNovo,VariantFilteringParam-method"
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        "genePhylostrata,GenePhylostrataDb-method",
        "GenePhylostrataDb",
        "GenePhylostrataDb-class",
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        "show,GenePhylostrataDb-method"
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      "page": "readAAradicalChangeMatrix",
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        "unrelatedIndividuals,VariantFilteringParam-method"
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      "page": "VariantFilteringParam-class",
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        "class:VariantFilteringParam",
        "cutoffs,VariantFilteringParam-method",
        "filters,VariantFilteringParam-method",
        "names,VariantFilteringParam-method",
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        "sog,VariantFilteringParam-method",
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        "allVariants,VariantFilteringResults-method",
        "annoGroups",
        "annoGroups,VariantFilteringResults-method",
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        "bamFiles,VariantFilteringResults-method",
        "bamFiles<-",
        "bamFiles<-,VariantFilteringResults,BamViews-method",
        "bamFiles<-,VariantFilteringResults-method",
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        "change<-,CutoffsList",
        "change<-,CutoffsList,ANY,character-method",
        "change<-,CutoffsList,ANY,integer-method",
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        "cutoffs<-,VariantFilteringResults,logical-method",
        "cutoffs<-,VariantFilteringResults-method",
        "CutoffsList",
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        "filteredVariants",
        "filteredVariants,VariantFilteringResults-method",
        "filters",
        "filters,VariantFilteringResults-method",
        "filters<-",
        "filters<-,VariantFilteringResults-method",
        "filtersMetadata",
        "filtersMetadata,VariantFilteringParam-method",
        "filtersMetadata,VariantFilteringResults-method",
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        "length",
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        "show,CompressedVRangesList-method",
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        "show,VariantFilteringResultsUI-method",
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      "title": "FiveSpliceSiteVariants and ThreeSpliceSiteVariants subclasses of VariantType",
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        "downstream,FiveSpliceSiteVariants-method",
        "downstream,ThreeSpliceSiteVariants-method",
        "downstream<-",
        "downstream<-,FiveSpliceSiteVariants-method",
        "downstream<-,ThreeSpliceSiteVariants-method",
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        "minIntronLength,FiveSpliceSiteVariants-method",
        "minIntronLength,ThreeSpliceSiteVariants-method",
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        "minIntronLength<-,ThreeSpliceSiteVariants-method",
        "show,FiveSpliceSiteVariants-method",
        "show,ThreeSpliceSiteVariants-method",
        "ThreeSpliceSiteVariants",
        "ThreeSpliceSiteVariants-class",
        "upstream",
        "upstream,FiveSpliceSiteVariants-method",
        "upstream,ThreeSpliceSiteVariants-method",
        "upstream<-",
        "upstream<-,FiveSpliceSiteVariants-method",
        "upstream<-,ThreeSpliceSiteVariants-method"
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    {
      "page": "WeightMatrix-class",
      "title": "Weight matrix class",
      "topics": [
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        "conservedPositions,WeightMatrix-method",
        "readWm",
        "show,WeightMatrix-method",
        "WeightMatrix",
        "WeightMatrix-class",
        "width,WeightMatrix-method",
        "wmFilename",
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        "wmLocations",
        "wmLocations,WeightMatrix-method",
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        "wmLocations<-,WeightMatrix-method",
        "wmName",
        "wmName,WeightMatrix-method",
        "wmScore",
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        "wmScore,character,DNAStringSet-method",
        "wmScore,WeightMatrix,character-method",
        "wmScore,WeightMatrix,DNAStringSet-method",
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        "wmStrictLocations<-",
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      "page": "xLinked",
      "title": "X-Linked inheritance analysis",
      "topics": [
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        "xLinked,VariantFilteringParam-method"
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