{ "_id": "6abe6b8399f7aa8c6aa566fe", "Package": "TrIdent", "Type": "Package", "BiocType": "Software", "Title": "TrIdent - Transduction Identification", "Version": "1.5.3", "Authors@R": "c(person(given = \"Jessie\",\nfamily = \"Maier\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jlmaier@ncsu.edu\",\ncomment = c(ORCID = \"0009-0001-8575-5386\")),\nperson(given = \"Yixuan\",\nfamily = \"Yang\",\nrole = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0009-0003-5064-6512\")),\nperson(given = \"Jorden\",\nfamily = \"Rabasco\",\nrole = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0002-6971-6678\")),\nperson(given=\"Craig\",\nfamily=\"Gin\",\nrole=c(\"aut\"),\ncomment=c(ORCID= \"0000-0002-7447-663X\")),\nperson(given=\"Benjamin\",\nfamily=\"Callahan\",\nrole=c(\"aut\"),\ncomment=c(ORCID= \"0000-0002-8752-117X\")),\nperson(given=\"Manuel\",\nfamily=\"Kleiner\",\nrole=c(\"aut\",\"ths\"),\ncomment=c(ORCID= \"0000-0001-6904-0287\")))", "Description": "The `TrIdent` R package automates the analysis of\ntransductomics data by detecting, classifying, and\ncharacterizing read coverage patterns associated with potential\ntransduction events. Transductomics is a DNA sequencing-based\nmethod for the detection and characterization of transduction\nevents in pure cultures and complex communities. Transductomics\nrelies on mapping sequencing reads from a viral-like particle\n(VLP)-fraction of a sample to contigs assembled from the\nmetagenome (whole-community) of the same sample. Reads from\nbacterial DNA carried by VLPs will map back to the bacterial\ncontigs of origin creating read coverage patterns indicative of\nongoing transduction.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "false", "biocViews": "Coverage, Metagenomics, PatternLogic, Classification,\nSequencing", "URL": "https://github.com/jlmaier12/TrIdent,\nhttps://jlmaier12.github.io/TrIdent/", "BugReports": "https://github.com/jlmaier12/TrIdent/issues", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-01 03:19:17 UTC", "RemoteUrl": "https://github.com/bioc/TrIdent", "RemoteRef": "HEAD", "RemoteSha": "a4ee81929e1b8ca622131e6b9b907e4799f62454", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-01 13:06:43 UTC", "User": "root" }, "Author": "Jessie Maier [aut, cre] (ORCID:\n),\nYixuan Yang [aut, ctb] (ORCID: ),\nJorden Rabasco [aut, ctb] (ORCID:\n),\nCraig Gin [aut] (ORCID: ),\nBenjamin Callahan [aut] (ORCID:\n),\nManuel Kleiner [aut, ths] (ORCID:\n)", "Maintainer": "Jessie Maier ", "_user": "bioc", "_type": "src", "_file": "TrIdent_1.5.3.tar.gz", "_fileid": "https://r2.ropensci.org/85b1acdea2c943bfadbf0d8443c3abf323b140dd623f0bfa072c6e9d8f0da19b", "_filesize": 1798475, "_sha256": "85b1acdea2c943bfadbf0d8443c3abf323b140dd623f0bfa072c6e9d8f0da19b", "_expires": "2027-01-09T14:17:36.000Z", "_created": "2026-10-01T13:06:43.000Z", "_published": "2026-10-01T14:17:38.946Z", "_bioccheck": { "error": 0, "warning": 0, "note": 6 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36865874488", "_status": "success", "_upstream": "https://github.com/bioc/TrIdent", "_commit": { "id": "a4ee81929e1b8ca622131e6b9b907e4799f62454", "author": "jlmaier ", "committer": "jlmaier ", "message": "Add plotting functionality, cleanup old code\n", "time": 1788232757 }, "_maintainer": { "name": "Jessie 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