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  "Title": "A package for the analysis of GC-MS metabolite profiling data",
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      "file": "TSExample.rda",
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      "page": "TargetSearch-package",
      "title": "A targeted approach for GC-MS data.",
      "topics": [
        "TargetSearch-package",
        "TargetSearch"
      ]
    },
    {
      "page": "baseline",
      "title": "Baseline correction - wrapper function",
      "topics": [
        "baseline"
      ]
    },
    {
      "page": "baselineCorrection",
      "title": "Baseline correction - Chang's method",
      "topics": [
        "baselineCorrection"
      ]
    },
    {
      "page": "baselineCorrectionQuant",
      "title": "Baseline correction - quantiles method",
      "topics": [
        "baselineCorrectionQuant"
      ]
    },
    {
      "page": "checkRimLim",
      "title": "Visually check retention index marker limits",
      "topics": [
        "checkRimLim"
      ]
    },
    {
      "page": "FAMEoutliers",
      "title": "FAME outlier detection",
      "topics": [
        "FAMEoutliers"
      ]
    },
    {
      "page": "FindAllPeaks",
      "title": "Extract peaks from chromatogram files - low level function",
      "topics": [
        "FindAllPeaks"
      ]
    },
    {
      "page": "FindPeaks",
      "title": "Extract peaks from chromatogram files",
      "topics": [
        "FindPeaks"
      ]
    },
    {
      "page": "fixRI",
      "title": "Fixing Retention Time Index Correction",
      "topics": [
        "fixRI"
      ]
    },
    {
      "page": "ImportFameSettings",
      "title": "Retention time markers settings",
      "topics": [
        "ImportFameSettings"
      ]
    },
    {
      "page": "ImportLibrary",
      "title": "Library import",
      "topics": [
        "ImportLibrary",
        "ImportLibrary.msp",
        "ImportLibrary.tab"
      ]
    },
    {
      "page": "ImportSamples",
      "title": "Sample definitions",
      "topics": [
        "ImportSamples",
        "ImportSamplesFromDir"
      ]
    },
    {
      "page": "makeIndex",
      "title": "Make an index vector out of selective/top masses",
      "topics": [
        "makeIndex"
      ]
    },
    {
      "page": "medianRILib",
      "title": "Median RI library correction",
      "topics": [
        "medianRILib"
      ]
    },
    {
      "page": "ncdf4_convert",
      "title": "Convert from a NetCDF file format 3 to format 4",
      "topics": [
        "ncdf4_convert"
      ]
    },
    {
      "page": "ncdf4_convert_from_path",
      "title": "Convert CDF files to CDF4 from a path automatically",
      "topics": [
        "ncdf4_convert_from_path"
      ]
    },
    {
      "page": "ncdf4_data_extract",
      "title": "Extract data ranges from a NetCDF file format 4",
      "topics": [
        "ncdf4_data_extract"
      ]
    },
    {
      "page": "ncdf4_plot_peak",
      "title": "Plot peaks from ncdf4 files",
      "topics": [
        "ncdf4_plot_peak"
      ]
    },
    {
      "page": "ncdf4_update_ri",
      "title": "Update retention time index on a NCDF4 file",
      "topics": [
        "ncdf4_update_ri"
      ]
    },
    {
      "page": "ncdf4Convert-method",
      "title": "Method for converting CDF-3 files to CDF-4",
      "topics": [
        "ncdf4Convert",
        "ncdf4Convert,tsSample-method"
      ]
    },
    {
      "page": "NetCDFPeakFinding",
      "title": "Peak picking algorithm from CDF files",
      "topics": [
        "NetCDFPeakFinding"
      ]
    },
    {
      "page": "peakCDFextraction",
      "title": "NetCDF to R",
      "topics": [
        "peakCDFextraction"
      ]
    },
    {
      "page": "peakFind",
      "title": "Intensities and RI matrices",
      "topics": [
        "peakFind"
      ]
    },
    {
      "page": "plotFAME",
      "title": "Plot a standard marker",
      "topics": [
        "plotFAME"
      ]
    },
    {
      "page": "plotPeak",
      "title": "Plot peaks",
      "topics": [
        "plotPeak"
      ]
    },
    {
      "page": "plotPeakRI",
      "title": "Plot peak RI across samples",
      "topics": [
        "plotPeakRI"
      ]
    },
    {
      "page": "plotPeakSimple",
      "title": "Plot peaks - simple (old) interface",
      "topics": [
        "plotPeakSimple"
      ]
    },
    {
      "page": "plotRefSpectra",
      "title": "Plot reference spectrum of a compound",
      "topics": [
        "plotRefSpectra"
      ]
    },
    {
      "page": "plotRIdev",
      "title": "Plot Retention Time Index Deviation",
      "topics": [
        "plotAllRIdev",
        "plotRIdev"
      ]
    },
    {
      "page": "plotSpectra",
      "title": "Plot a Spectra Comparison",
      "topics": [
        "plotAllSpectra",
        "plotSpectra"
      ]
    },
    {
      "page": "Profile",
      "title": "Average the correlating masses for each metabolite",
      "topics": [
        "Profile"
      ]
    },
    {
      "page": "ProfileCleanUp",
      "title": "Reduce redundancy of the profile",
      "topics": [
        "ProfileCleanUp"
      ]
    },
    {
      "page": "quantMatrix",
      "title": "Create an intensity matrix using quantification masses",
      "topics": [
        "quantMatrix"
      ]
    },
    {
      "page": "ri_data_extract",
      "title": "Extract peak data from a RI file",
      "topics": [
        "ri_data_extract"
      ]
    },
    {
      "page": "ri_plot_peak",
      "title": "Plot peak RI across samples - low level interface",
      "topics": [
        "ri_plot_peak"
      ]
    },
    {
      "page": "ri2rt",
      "title": "Retention Time Index to Retention Time conversion",
      "topics": [
        "ri2rt"
      ]
    },
    {
      "page": "RIcorrect",
      "title": "Peak picking from CDF files and RI correction",
      "topics": [
        "RIcorrect"
      ]
    },
    {
      "page": "riMatrix",
      "title": "Retention Time Index Matrix",
      "topics": [
        "riMatrix"
      ]
    },
    {
      "page": "rt2ri",
      "title": "Retention Time to Retention Time Index conversion",
      "topics": [
        "rt2ri"
      ]
    },
    {
      "page": "sampleRI",
      "title": "Sample specific RI detection",
      "topics": [
        "sampleRI"
      ]
    },
    {
      "page": "TargetSearch-defunct",
      "title": "Defunct functions in package 'TargetSearch'",
      "topics": [
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        "fixRIcorrection-defunct",
        "TargetSearch-defunct",
        "TargetSearchGUI"
      ]
    },
    {
      "page": "TargetSearch-deprecated",
      "title": "Deprecated functions in package 'TargetSearch'",
      "topics": [
        "TargetSearch-deprecated"
      ]
    },
    {
      "page": "file",
      "title": "Convert RI files from text to binary format and vice versa",
      "topics": [
        "bin2text",
        "text2bin"
      ]
    },
    {
      "page": "TSExample",
      "title": "Example GC-MS data for TargetSearch Package",
      "topics": [
        "corRI",
        "metabProfile",
        "peakData",
        "refLibrary",
        "RImatrix",
        "sampleDescription",
        "TSExample"
      ]
    },
    {
      "page": "tsLib-class",
      "title": "Class for representing a reference library",
      "topics": [
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        "c,tsLib-method",
        "length,tsLib-method",
        "libData",
        "libData,tsLib-method",
        "libData<-",
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        "libId",
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        "libName",
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      "page": "tsMSdata-class",
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      "page": "tsSample-class",
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      "title": "Updating Time Index correction",
      "topics": [
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    {
      "page": "Write.Results",
      "title": "Save TargetSearch result objects into files",
      "topics": [
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    {
      "page": "writeLibText",
      "title": "Save a library object in text format",
      "topics": [
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    {
      "page": "writeMSP",
      "title": "Save spectra in MSP format to be visualized in NIST",
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