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It\ncan also scan putative TFBS from sequence/alignment, query\nJASPAR database and provides a wrapper of de novo motif\ndiscovery software.", "Authors@R": "person(\"Ge\", \"Tan\", email=\"ge_tan@live.com\",\nrole = c(\"aut\", \"cre\"))", "VignetteBuilder": "knitr", "License": "GPL-2", "URL": "https://github.com/ge11232002/TFBSTools", "BugReports": "https://github.com/ge11232002/TFBSTools/issues", "Type": "Package", "biocViews": "MotifAnnotation, GeneRegulation, MotifDiscovery,\nTranscription, Alignment", "NeedsCompilation": "yes", "LazyData": "yes", "Collate": "AllGenerics.r AllClasses.r show-methods.r util-methods.r\nXMatrix-methods.r XMatrixList-methods.r SiteSet-methods.r\ncoercion-methods.r DB-methods.r JASPAR.R\nPairwiseAlignment-methods.r ICM-methods.r PWM-methods.r\nMotif-methods.r PFM-methods.r Wrappers-methods.r\nDirichletMixture.r TFFM.R TFFMseqLogo.R IO.R Enrichment.R", "Config/pak/sysreqs": "make libgsl0-dev libbz2-dev liblzma-dev libxml2-dev\nlibssl-dev xz-utils 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string", "PWM similarity", "Dynamic random profile generation", "TFFM methods", "The graphical representation of TFFM", "Scan sequence and alignments with PWM pattern", "searchSeq", "searchAln", "searchPairBSgenome", "Use de novo motif discovery software", "MEME", "Session info", "References" ], "created": "2015-11-17 13:18:55", "modified": "2025-03-12 16:25:58", "commits": 8 } ], "_score": 11.6324621513965, "_indexed": true, "_nocasepkg": "tfbstools", "_universes": [ "bioc", "genereg", "ge11232002" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.51.0", "date": "2026-06-23T15:25:36.000Z", "distro": "resolute", "arch": "aarch64", "commit": "f7b3785310fe63785abc69c5e84f6f095979725d", "fileid": "93742328bad0f91a617cef311175453a26b64660cd7a3a2eaeb074fa134bd555", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28036260230" }, { "r": "4.7.0", "os": "linux", "version": "1.51.0", "date": "2026-06-23T15:25:52.000Z", "distro": 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