{
  "_id": "6a153d15acfb0bcc41d54120",
  "Package": "TEKRABber",
  "Type": "Package",
  "Title": "An R package estimates the correlations of orthologs and\ntransposable elements between two species",
  "Version": "1.17.0",
  "Description": "TEKRABber is made to provide a user-friendly pipeline for\ncomparing orthologs and transposable elements (TEs) between two\nspecies. It considers the orthology confidence between two\nspecies from BioMart to normalize expression counts and detect\ndifferentially expressed orthologs/TEs. Then it provides one to\none correlation analysis for desired orthologs and TEs. There\nis also an app function to have a first insight on the result.\nUsers can prepare orthologs/TEs RNA-seq expression data by\ntheir own preference to run TEKRABber following the data\nstructure mentioned in the vignettes.",
  "Authors@R": "c(person(\"Yao-Chung\", \"Chen\", email = \"yao-chung.chen@fu-berlin.de\", \nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9927-9130\")),\nperson(\"Katja\", \"Nowick\", email = \"katja.nowick@fu-berlin.de\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-3993-4479\")))",
  "URL": "https://github.com/ferygood/TEKRABber",
  "BugReports": "https://github.com/ferygood/TEKRABber/issues",
  "Encoding": "UTF-8",
  "License": "LGPL (>=3)",
  "LazyData": "false",
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  "biocViews": "DifferentialExpression, Normalization, Transcription,\nGeneExpression",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:48 UTC",
  "RemoteUrl": "https://github.com/bioc/TEKRABber",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "yes",
  "Packaged": {
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    "User": "root"
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  "Author": "Yao-Chung Chen [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9927-9130>),\nKatja Nowick [aut] (ORCID: <https://orcid.org/0000-0003-3993-4479>)",
  "Maintainer": "Yao-Chung Chen <yao-chung.chen@fu-berlin.de>",
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      "title": "appTEKRABber",
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      "engine": "knitr::rmarkdown",
      "headings": [
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        "Installation",
        "Examples",
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        "Query ortholog information and estimate scaling factor",
        "Create inputs for differentially expressed analysis and correlation estimation",
        "Differentially expressed analysis (DE analysis)",
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        "Explore your result using appTEKRABber():",
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      "created": "2021-11-29 16:30:50",
      "modified": "2024-02-23 17:02:30",
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