{
  "_id": "6abff62f99f7aa8c6aa59b11",
  "Package": "TDbasedUFEadv",
  "Type": "Package",
  "Title": "Advanced package of tensor decomposition based unsupervised\nfeature extraction",
  "Version": "1.13.3",
  "Language": "en-US",
  "Authors@R": "person(\"Y-h.\", \"Taguchi\", ,\n\"tag@granular.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID  = \"0000-0003-0867-8986\"))",
  "Description": "This is an advanced version of TDbasedUFE, which is a\ncomprehensive package to perform Tensor decomposition based\nunsupervised feature extraction. In contrast to TDbasedUFE\nwhich can perform simple the feature selection and the\nmultiomics analyses, this package can perform more complicated\nand advanced features, but they are not so popularly required.\nOnly users who require more specific features can make use of\nits functionality.",
  "biocViews": "GeneExpression, FeatureExtraction, MethylationArray,\nSingleCell, Software",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "BugReports": "https://github.com/tagtag/TDbasedUFEadv/issues",
  "URL": "https://github.com/tagtag/TDbasedUFEadv",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/roxygen2/version": "8.1.0",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-10-02 09:33:02 UTC",
  "RemoteUrl": "https://github.com/bioc/TDbasedUFEadv",
  "RemoteRef": "HEAD",
  "RemoteSha": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-02 17:46:26 UTC",
    "User": "root"
  },
  "Author": "Y-h. Taguchi [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0867-8986>)",
  "Maintainer": "Y-h. Taguchi <tag@granular.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "TDbasedUFEadv_1.13.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/ec1435f7d87ff8c926c439055406b6c1642fe6c5f4990aa2ce86026fa96c2ae6",
  "_filesize": 2020179,
  "_sha256": "ec1435f7d87ff8c926c439055406b6c1642fe6c5f4990aa2ce86026fa96c2ae6",
  "_expires": "2027-01-10T18:21:33.000Z",
  "_created": "2026-10-02T17:46:26.000Z",
  "_published": "2026-10-02T18:21:35.655Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382",
  "_status": "failure",
  "_upstream": "https://github.com/bioc/TDbasedUFEadv",
  "_commit": {
    "id": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
    "author": "Y-h. Taguchi <tag@granular.com>",
    "committer": "Y-h. Taguchi <tag@granular.com>",
    "message": "Replace removed enrichDGN example with HDO enrichment\n",
    "time": 1790933582
  },
  "_maintainer": {
    "name": "Y-h. Taguchi",
    "email": "tag@granular.com",
    "login": "tagtag",
    "description": "I was selected as top 2% researchers by Stanford Univ.\nhttp://is.gd/MJ0pDm\n\nMy book was published from Springer.\nhttp://bit.ly/31uMVTK",
    "uuid": 11694497,
    "orcid": "0000-0003-0867-8986"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 110957544303,
      "time": 285,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11243480974"
    },
    {
      "job": 110957544116,
      "time": 362,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11243851021"
    },
    {
      "job": 110957544019,
      "time": 286,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11243740927"
    },
    {
      "job": 110957544032,
      "time": 210,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11243396195"
    },
    {
      "job": 110957544147,
      "time": 160,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11243950566"
    },
    {
      "job": 110955356062,
      "time": 350,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11243290625"
    },
    {
      "job": 110957543980,
      "time": 198,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11243880642"
    },
    {
      "job": 110957544090,
      "time": 2057,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11244507213"
    },
    {
      "job": 110957544142,
      "time": 2042,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11245040578"
    },
    {
      "job": 110957544011,
      "time": 2057,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11245360345"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "TDbasedUFE",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "rTensor",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "hash",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "MOFAdata",
      "role": "Suggests"
    },
    {
      "package": "curatedTCGAData",
      "role": "Suggests"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Suggests"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Suggests"
    },
    {
      "package": "STRINGdb",
      "role": "Suggests"
    },
    {
      "package": "enrichR",
      "role": "Suggests"
    },
    {
      "package": "enrichplot",
      "role": "Suggests"
    },
    {
      "package": "DOSE",
      "role": "Suggests"
    },
    {
      "package": "gson",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-19",
      "n": 1
    },
    {
      "week": "2026-40",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.13.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.12.1",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "geneexpression",
    "featureextraction",
    "methylationarray",
    "singlecell",
    "software",
    "bioconductor-package",
    "bioinformatics",
    "tensor-decomposition"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "tagtag",
      "count": 62,
      "uuid": 11694497
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 470,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 338,
    "source": "https://www.bioconductor.org/packages/stats/bioc/TDbasedUFEadv"
  },
  "_devurl": "https://github.com/tagtag/tdbasedufeadv",
  "_searchresults": 10,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TDbasedUFEadv.html"
  ],
  "_homeurl": "https://github.com/tagtag/tdbasedufeadv",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "computeSVD",
    "prepareCondDrugandDisease",
    "prepareCondTCGA",
    "prepareexpDrugandDisease",
    "prepareTensorfromList",
    "prepareTensorfromMatrix",
    "prepareTensorRect",
    "selectFeatureProj",
    "selectFeatureRect",
    "selectFeatureTransRect",
    "transSVD"
  ],
  "_help": [
    {
      "page": "computeSVD",
      "title": "Title Perform SVD toward reduced matrix generated from a tensor with partial summation",
      "topics": [
        "computeSVD"
      ]
    },
    {
      "page": "prepareCondDrugandDisease",
      "title": "Prepare condition matrix for expDrug",
      "topics": [
        "prepareCondDrugandDisease"
      ]
    },
    {
      "page": "prepareCondTCGA",
      "title": "Prepare Sample label for TCGA data",
      "topics": [
        "prepareCondTCGA"
      ]
    },
    {
      "page": "prepareexpDrugandDisease",
      "title": "Generating gene expression of drug treated cell lines and a disease cell line",
      "topics": [
        "prepareexpDrugandDisease"
      ]
    },
    {
      "page": "prepareTensorfromList",
      "title": "Prepare tensor from a list that includes multiple profiles",
      "topics": [
        "prepareTensorfromList"
      ]
    },
    {
      "page": "prepareTensorfromMatrix",
      "title": "Generate tensor from two matrices",
      "topics": [
        "prepareTensorfromMatrix"
      ]
    },
    {
      "page": "prepareTensorRect",
      "title": "Prepare tensor generated from two matrices that share samples",
      "topics": [
        "prepareTensorRect"
      ]
    },
    {
      "page": "selectFeatureProj",
      "title": "Select feature when projection strategy is employed for the case where features are shared with multiple omics profiles",
      "topics": [
        "selectFeatureProj"
      ]
    },
    {
      "page": "selectFeatureRect",
      "title": "Select features through the selection of singular value vectors",
      "topics": [
        "selectFeatureRect"
      ]
    },
    {
      "page": "selectFeatureTransRect",
      "title": "Select features for a tensor generated from two matrices that share samples.",
      "topics": [
        "selectFeatureTransRect"
      ]
    },
    {
      "page": "TensorRect-class",
      "title": "Class definitions",
      "topics": [
        "TensorRect-class"
      ]
    },
    {
      "page": "transSVD",
      "title": "Convert SVD to that for the case where samples are shared between two matrices",
      "topics": [
        "transSVD"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/TDbasedUFEadv/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "Biobase",
    "BiocGenerics",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "digest",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "GenomicRanges",
    "glue",
    "hash",
    "htmltools",
    "httpuv",
    "IRanges",
    "jquerylib",
    "jsonlite",
    "later",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "MOFAdata",
    "otel",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rTensor",
    "S4Vectors",
    "sass",
    "Seqinfo",
    "shiny",
    "sourcetools",
    "TDbasedUFE",
    "withr",
    "xtable"
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "tdbasedufeadv",
  "_universes": [
    "bioc",
    "tagtag"
  ],
  "_previous": "1.13.2",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.13.3",
      "date": "2026-10-02T17:51:49.000Z",
      "distro": "resolute",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/24bd3b0355e9715e594a5d1b9fc455bc72092a943e18eefc09db868876cc27fc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.13.3",
      "date": "2026-10-02T17:50:35.000Z",
      "distro": "resolute",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/c34ba04f1508f75428d95510ec8646e248aca22cdb71d0c97d5f85906913bd56",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.13.3",
      "date": "2026-10-02T17:49:19.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/2de2483aa221f1bb3b5f810ca882012085c69976514e8f9a35cfc56cea053d4f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.13.3",
      "date": "2026-10-02T17:48:44.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/6420c8deed027c67ff83103ba3f62e6681c09b585cd6a3f375fe0e286b2498d7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.13.3",
      "date": "2026-10-02T17:50:05.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/d8ccf751860e773ebf2b63188c42efee9c2fc31925cb3188f397aed24f1030d7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.13.3",
      "date": "2026-10-02T18:19:51.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/dfd6c39e97069ffef7b93437a5d87bf79b76315c2e8ca052fa105687c359f91f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.13.3",
      "date": "2026-10-02T18:19:37.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/4a90100e11dd0649112856bbb0e6d5d103c5b2c02f9445abe0fd28a7b706a6d6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.13.3",
      "date": "2026-10-02T18:19:53.000Z",
      "commit": "fae3717912b0bd18b9d6a9cc0afe6bb8b4873de9",
      "fileid": "https://r2.ropensci.org/511dc3d246c8a3f8c68d7e8dd6d44a2f58aa2320d47e4f770185aa24185bb4fe",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/37042334382"
    }
  ]
}