{ "_id": "6a61d312768d0b54cfc79252", "Package": "Structstrings", "Title": "Implementation of the dot bracket annotations with Biostrings", "Version": "1.29.0", "Date": "2025-09-22", "Authors@R": "person(\"Felix G.M.\",\"Ernst\",\nemail = \"felix.gm.ernst@outlook.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5064-0928\"))", "Description": "The Structstrings package implements the widely used dot\nbracket annotation for storing base pairing information in\nstructured RNA. Structstrings uses the infrastructure provided\nby the Biostrings package and derives the DotBracketString and\nrelated classes from the BString class. From these, base pair\ntables can be produced for in depth analysis. In addition, the\nloop indices of the base pairs can be retrieved as well. For\nbetter efficiency, information conversion is implemented in C,\ninspired to a large extend by the ViennaRNA package.", "License": "Artistic-2.0", "Encoding": "UTF-8", "LazyData": "false", "biocViews": "DataImport, DataRepresentation, Infrastructure, Sequencing,\nSoftware, Alignment, SequenceMatching", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Collate": "'Structstrings.R' 'AllGenerics.R'\n'Structstrings-DotBracket-io.R'\n'Structstrings-DotBracketDataFrame.R'\n'Structstrings-DotBracketString.R'\n'Structstrings-DotBracketStringSet.R'\n'Structstrings-DotBracketStringSetList.R'\n'Structstrings-LoopIndexList.R'\n'Structstrings-StructuredXStringSet.R'\n'Structstrings-alphabet.R' 'Structstrings-conversion.R'\n'utils.R' 'zzz.R'", "NeedsCompilation": "yes", "BugReports": "https://github.com/FelixErnst/Structstrings/issues", "URL": "https://github.com/FelixErnst/Structstrings", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:49:46 UTC", "RemoteUrl": "https://github.com/bioc/Structstrings", "RemoteRef": "HEAD", "RemoteSha": "c0fda74d180ea92b54517864bdaf54009d391cbb", "Packaged": { "Date": "2026-07-23 08:22:07 UTC", "User": "root" }, "Author": "Felix G.M. 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