{ "_id": "6a1afe8d1d7bb097a09fe796", "Package": "SpliceImpactR", "Type": "Package", "Title": "An R package to identify functional impacts due to alternative\nRNA processing events", "Version": "1.1.0", "Authors@R": "c(person(given=\"Zachary\", family=\"Wakefield\",\nemail = \"zachpw@bu.edu\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-9104-0934\")),\nperson(given=\"Ana\", family=\"Fiszbein\",\nemail = \"anafisz@bu.edu\",\nrole = c(\"aut\")))", "Description": "Works by taking in processed data from the HIT Index\nand/or rMATS and identifying how differentially used\nalternative RNA processing events lead to changes in protein\nfunction through various means. Primarily this is done through\nprotein similarity, functional protein domain analysis, and\ndomain-domain interaction changes. Notably, we both identify\nalterantive RNA processing event 'swaps' across condition and\nare able to perform holistic analyses regarding the impact of\ndifferent RNA processing events.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "biocViews": "AlternativeSplicing, DifferentialSplicing,\nStatisticalMethod, Alignment", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "BugReports": "https://github.com/fiszbein-lab/SpliceImpactR/issues", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:06:51 UTC", "RemoteUrl": "https://github.com/bioc/SpliceImpactR", "RemoteRef": "HEAD", "RemoteSha": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:52:45 UTC", "User": "root" }, "Author": "Zachary Wakefield [cre, aut] (ORCID:\n),\nAna Fiszbein [aut]", "Maintainer": "Zachary Wakefield ", "MD5sum": "468b2adc9496005a51b7af45659d03bc", "_user": "bioc", "_type": "src", "_file": "SpliceImpactR_1.1.0.tar.gz", "_fileid": "1ef8721989818e5bfdbb79403fba3851e122ba17419b0abde69198381379fc30", "_filesize": 6376572, "_sha256": "1ef8721989818e5bfdbb79403fba3851e122ba17419b0abde69198381379fc30", "_created": "2026-05-30T09:52:45.000Z", "_published": "2026-05-30T15:13:17.481Z", "_jobs": [ { "job": 78640930416, "time": 325, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7307584569" }, { "job": 78640930421, "time": 601, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7307612170" }, { "job": 78640930426, "time": 645, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7307616510" }, { "job": 78640930429, "time": 323, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7309151725" }, { "job": 78640930435, "time": 297, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7309149603" }, { "job": 78639958947, "time": 495, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307326535" }, { "job": 78640930425, "time": 255, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307577319" }, { "job": 78640930484, "time": 529, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7307605875" }, { "job": 78640930459, "time": 426, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7307596107" }, { "job": 78640930465, "time": 422, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7307596203" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/SpliceImpactR", "_commit": { "id": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381611 }, "_maintainer": { "name": "Zachary Wakefield", "email": "zachpw@bu.edu", "login": "zachpwakefield", "description": "", "uuid": 59847937, "orcid": "0000-0002-9104-0934" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "data.table", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "biomaRt", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "PFAM.db", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggpubr", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "pwalign", "role": "Imports" }, { "package": "rtracklayer", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "devtools", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "cowplot", "role": "Suggests" }, { "package": "stringr", "role": "Suggests" }, { "package": "readr", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "clusterProfiler", "role": "Suggests" }, { "package": "AnnotationDbi", "role": "Suggests" }, { "package": "msigdbr", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "org.Mm.eg.db", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-46", "n": 5 }, { "week": "2026-13", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23" } ], "_topics": [ "alternativesplicing", "differentialsplicing", "statisticalmethod", "alignment" ], "_stars": 2, "_contributors": [ { "user": "zachpwakefield", "count": 34, "uuid": 59847937 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 235, "source": "https://www.bioconductor.org/packages/stats/bioc/SpliceImpactR" }, "_devurl": "https://github.com/fiszbein-lab/spliceimpactr", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SpliceImpactR.html", "manual.pdf" ], "_homeurl": "https://github.com/fiszbein-lab/spliceimpactr", "_realowner": "bioc", "_cranurl": false, "_exports": [ "add_splice_part", "as_dt_from_s4", "as_splice_impact_result", "attach_sequences", "compare_hit_index", "compare_sequence_frame", "compare_sequences_alignment", "compare_transcript_pairs", "enrich_by_db", "enrich_by_event", "enrich_domains_hypergeo", "filter_spliceimpact_hits", "get_annotation", "get_background", "get_comprehensive_annotations", "get_di_gene_enrichment", "get_differential_inclusion", "get_domain_gene_for_enrichment", "get_domains", "get_enrichment", "get_exon_features", "get_gene_enrichment", "get_hitindex", "get_hits_core", "get_hits_domain", "get_hits_final_view", "get_hits_ppi", "get_hits_sequence", "get_manual_features", "get_matched_events_chunked", "get_pairs", "get_ppi_gene_enrichment", "get_ppi_interactions", "get_ppi_switches", "get_protein_features", "get_proximal_shift_from_hits", "get_rmats", "get_rmats_hit", "get_rmats_post_di", "get_splicing_impact", "get_user_data", "get_user_data_post_di", "import_di_table", "integrated_event_summary", "keep_sig_pairs", "load_example_data", "load_rmats", "overview_spicing_comparison", "plot_alignment_summary", "plot_di_volcano_dt", "plot_enriched_domains_counts", "plot_length_comparison", "plot_ppi_summary", "plot_two_transcripts_with_domains_unified", "probe_individual_event", "spliceimpact_s4_guide", "spliceimpact_s4_schema" ], "_help": [ { "page": "add_splice_part", "title": "Add one part to an existing SpliceImpactResult", "topics": [ "add_splice_part" ] }, { "page": "as_dt_from_s4", "title": "Convert S4 slots back to data.table", "topics": [ "as_dt_from_s4" ] }, { "page": "as_splice_impact_result", "title": "Build S4 SpliceImpact container", "topics": [ "as_splice_impact_result" ] }, { "page": "attach_sequences", "title": "Attach transcript and protein sequences to an event or annotation table", "topics": [ "attach_sequences" ] }, { "page": "compare_hit_index", "title": "Compare HIT index values between conditions", "topics": [ "compare_hit_index" ] }, { "page": "compare_sequence_frame", "title": "Compare frame states after sequence alignment", "topics": [ "compare_sequence_frame" ] }, { "page": "compare_sequences_alignment", "title": "Compare isoform nucleotide and protein sequences by pairwise alignment", "topics": [ "compare_sequences_alignment" ] }, { "page": "compare_transcript_pairs", "title": "Compare user-selected transcript pairs", "topics": [ "compare_transcript_pairs" ] }, { "page": "enrich_by_db", "title": "Run domain enrichment by database", "topics": [ "enrich_by_db" ] }, { "page": "enrich_by_event", "title": "Run domain enrichment by event type", "topics": [ "enrich_by_event" ] }, { "page": "enrich_domains_hypergeo", "title": "Domain-level enrichment via hypergeometric test", "topics": [ "enrich_domains_hypergeo" ] }, { "page": "filter_spliceimpact_hits", "title": "Filter a SpliceImpactResult by arbitrary paired-hit columns", "topics": [ "filter_spliceimpact_hits" ] }, { "page": "get_annotation", "title": "Load and cache GENCODE annotations, sequences, and hybrid exon annotations", "topics": [ "get_annotation" ] }, { "page": "get_background", "title": "Build a transcript-pair background with domain and length annotations", "topics": [ "get_background" ] }, { "page": "get_comprehensive_annotations", "title": "Combine multiple sources of protein feature annotations", "topics": [ "get_comprehensive_annotations" ] }, { "page": "get_di_gene_enrichment", "title": "Extract Differential-Inclusion Genes for Enrichment", "topics": [ "get_di_gene_enrichment" ] }, { "page": "get_differential_inclusion", "title": "Differential Inclusion Analysis from Hit Index Tables", "topics": [ "get_differential_inclusion" ] }, { "page": "get_domain_gene_for_enrichment", "title": "Extract Domain-Altering Genes for Enrichment", "topics": [ "get_domain_gene_for_enrichment" ] }, { "page": "get_domains", "title": "Add protein domain annotations to splicing events", "topics": [ "get_domains" ] }, { "page": "get_enrichment", "title": "Gene Set Enrichment for Splicing-Linked Gene Lists", "topics": [ "get_enrichment" ] }, { "page": "get_exon_features", "title": "Map protein features to coding exons", "topics": [ "get_exon_features" ] }, { "page": "get_gene_enrichment", "title": "Unified gene selector for enrichment foregrounds", "topics": [ "get_gene_enrichment" ] }, { "page": "get_hitindex", "title": "Load HIT index PSI files for one or more samples/conditions.", "topics": [ "get_hitindex" ] }, { "page": "get_hits_core", "title": "Convenience accessor for core paired-hit columns", "topics": [ "get_hits_core" ] }, { "page": "get_hits_domain", "title": "Convenience accessor for domain-focused paired-hit columns", "topics": [ "get_hits_domain" ] }, { "page": "get_hits_final_view", "title": "Access paired-hits as compact data.table subsets", "topics": [ "get_hits_final_view" ] }, { "page": "get_hits_ppi", "title": "Convenience accessor for PPI-focused paired-hit columns", "topics": [ "get_hits_ppi" ] }, { "page": "get_hits_sequence", "title": "Convenience accessor for sequence/frame-focused paired-hit columns", "topics": [ "get_hits_sequence" ] }, { "page": "get_manual_features", "title": "Incorporate user-supplied protein features", "topics": [ "get_manual_features" ] }, { "page": "get_matched_events_chunked", "title": "Match splicing events to transcript annotations in chunks", "topics": [ "get_matched_events_chunked" ] }, { "page": "get_pairs", "title": "Pair inclusion and exclusion forms of splicing events", "topics": [ "get_pairs" ] }, { "page": "get_ppi_gene_enrichment", "title": "Extract Protein-Interaction-Affected Genes for Enrichment", "topics": [ "get_ppi_gene_enrichment" ] }, { "page": "get_ppi_interactions", "title": "Pull PPI from SpliceImpactR's data", "topics": [ "get_ppi_interactions" ] }, { "page": "get_ppi_switches", "title": "Annotate hits_domain with PPI changes for inclusion vs exclusion forms", "topics": [ "get_ppi_switches" ] }, { "page": "get_protein_features", "title": "External function to fetch protein features from biomaRt", "topics": [ "get_protein_features" ] }, { "page": "get_proximal_shift_from_hits", "title": "Classify splicing events as proximal or distal", "topics": [ "get_proximal_shift_from_hits" ] }, { "page": "get_rmats", "title": "Expand rMATS event tables into scalar exon inclusion/exclusion coordinates.", "topics": [ "get_rmats" ] }, { "page": "get_rmats_hit", "title": "Wrapper function to get both rmats and hit index cleanly", "topics": [ "get_rmats_hit" ] }, { "page": "get_rmats_post_di", "title": "Import post-differential-inclusion rMATS results", "topics": [ "get_rmats_post_di" ] }, { "page": "get_splicing_impact", "title": "End-to-end SpliceImpactR wrapper with selectable output class", "topics": [ "get_splicing_impact" ] }, { "page": "get_user_data", "title": "Get User-Supplied Splicing Event Data", "topics": [ "get_user_data" ] }, { "page": "get_user_data_post_di", "title": "Format user-supplied post-DI (post-differential-inclusion) splicing results", "topics": [ "get_user_data_post_di" ] }, { "page": "import_di_table", "title": "Standardize a differential inclusion (DI) result table", "topics": [ "import_di_table" ] }, { "page": "integrated_event_summary", "title": "Integrated summary of event classification, alignment, and domain changes", "topics": [ "integrated_event_summary" ] }, { "page": "keep_sig_pairs", "title": "Filter event pairs by significance and deltaPSI thresholds", "topics": [ "keep_sig_pairs" ] }, { "page": "load_example_data", "title": "Load bundled example inputs for documentation", "topics": [ "load_example_data" ] }, { "page": "load_rmats", "title": "Load rMATS event files into standardized data.tables", "topics": [ "load_rmats" ] }, { "page": "overview_spicing_comparison", "title": "Overview of global splicing event distributions between conditions", "topics": [ "overview_spicing_comparison" ] }, { "page": "plot_alignment_summary", "title": "Plot alignment score distribution and coding summary", "topics": [ "plot_alignment_summary" ] }, { "page": "plot_di_volcano_dt", "title": "Volcano plot for differential inclusion results", "topics": [ "plot_di_volcano_dt" ] }, { "page": "plot_enriched_domains_counts", "title": "Plot enriched domains by associated event count", "topics": [ "plot_enriched_domains_counts" ] }, { "page": "plot_length_comparison", "title": "Compare inclusion vs. exclusion isoform lengths", "topics": [ "plot_length_comparison" ] }, { "page": "plot_ppi_summary", "title": "Plot summary of altered PPI interactions", "topics": [ "plot_ppi_summary" ] }, { "page": "plot_two_transcripts_with_domains_unified", "title": "Plot two transcripts with exon structure and protein feature tracks (unified view)", "topics": [ "plot_two_transcripts_with_domains_unified" ] }, { "page": "probe_individual_event", "title": "Visualize PSI values for a single splicing event", "topics": [ "probe_individual_event" ] }, { "page": "spliceimpact_s4_guide", "title": "Detailed guide for using SpliceImpactResult", "topics": [ "spliceimpact_s4_guide" ] }, { "page": "spliceimpact_s4_schema", "title": "S4 slot and key schema for SpliceImpactResult", "topics": [ "spliceimpact_s4_schema" ] }, { "page": "SpliceImpactResult-class", "title": "SpliceImpact result container (S4)", "topics": [ "SpliceImpactResult-class" ] } ], "_readme": "https://github.com/bioc/SpliceImpactR/raw/HEAD/README.md", "_rundeps": [ "abind", "AnnotationDbi", "askpass", "backports", "BH", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocIO", "BiocParallel", "biomaRt", "Biostrings", "bit", "bit64", "bitops", "blob", "boot", "broom", "cachem", "car", "carData", "cigarillo", "cli", "codetools", "colorspace", "corrplot", "cowplot", "cpp11", "crayon", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "Deriv", "doBy", "dplyr", "farver", "fastmap", "filelock", "forecast", "formatR", "Formula", "fracdiff", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicRanges", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "glue", "gridExtra", "gtable", "hms", "httr", "httr2", "IRanges", "isoband", "jsonlite", "KEGGREST", "labeling", "lambda.r", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixGenerics", "MatrixModels", "matrixStats", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "openssl", "patchwork", "pbkrtest", "PFAM.db", "pillar", "pkgconfig", "png", "polynom", "prettyunits", "progress", "purrr", "pwalign", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RCurl", "Rdpack", "reformulas", "restfulr", "Rhtslib", "rjson", "rlang", "Rsamtools", "RSQLite", "rstatix", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "scales", "Seqinfo", "snow", "SparseArray", "SparseM", "stringi", "stringr", "SummarizedExperiment", "survival", "sys", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "XML", "xml2", "XVector", "yaml", "zoo" ], "_vignettes": [ { "source": "SpliceImpactR.Rmd", "filename": "SpliceImpactR.html", "title": "SpliceImpactR", "author": "Zachary Wakefield, Ana Fiszbein", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Installation", "Option 1: BiocManager", "Option 2: devtools (GitHub)", "External tools and acronyms", "Workflow map", "Load Reference Resources", "Build Sample Manifest", "Quick start wrapper (get_splicing_impact)", "Read Splicing Events", "Sample-Level QC and Exploration", "Compare HITindex Between Conditions", "PSI Distribution Overview", "Differential Inclusion (DI)", "Match Events to Sequences and Build Transcript Pairs", "Sequence-Level Consequences", "Domain-Level Changes and Domain Enrichment", "PPI Rewiring", "Gene Enrichment Foreground Probes", "Visualize Transcript and Protein Consequences", "Inspect a Single Event", "Integrative Visualization", "Output Description (hits_final, data, res)", "hits_final (integrated event-level output)", "data (raw sample-level input table)", "res (differential inclusion output)", "S4 Applications and Accessors", "S4-first Main Workflow (Code Only)", "Custom Input Entry Points", "Add Manual Protein Features", "Pre-DI Custom Table", "Post-DI Custom Table", "Post-DI rMATS Import", "Transcript-Pair Entry Point", "Session Info" ], "created": "2025-11-11 18:26:47", "modified": "2026-03-23 17:18:10", "commits": 2 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "spliceimpactr", "_universes": [ "bioc", "zachpwakefield", "fiszbein-lab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-30T10:40:20.000Z", "distro": "noble", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "8e25914645bbde00390d194f3cc34195bff99d39c6eadb67216202752d130e7e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-30T10:40:24.000Z", "distro": "noble", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "4f4086eea59dc62c9d24a3d3f8de6704d32c1f12c7af4b8f5e0e971ef00d1b08", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-05-30T15:09:37.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "e72c3dd2fe01706a6b11acbaaa1b65a7eea56270cfb5850edbb788e4f555c76c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-05-30T15:09:23.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "604cd24ba9420ad84d2396868df45e3181c56b1f9769b0efc679b0fd6f1de689", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-05-30T10:39:44.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "9b0a8ec0a0e1e79353fbb520e9e3f85160d1872f766f7649bba7f4629656bc8c", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-05-30T10:38:31.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "6cbea8aaf46515db0fc396ee80861e596118c6639d552e86910739ca2d6bd1ff", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-05-30T10:38:20.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "360036d4a54aaa856ad54629bb0bbc0d9c408402875c785746c10e35d8694f7d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-05-30T10:38:18.000Z", "commit": "64b59abd29e1fab8340fd18f9bd4a9090606507f", "fileid": "7c000cb665bba1ef9505ff884306dae638d8dec7fcd20d7890ef2bfcb66846ce", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676931306" } ] }