{ "_id": "6a1afd8f1d7bb097a09fe22a", "Package": "SingleCellAlleleExperiment", "Title": "S4 Class for Single Cell Data with Allele and Functional Levels\nfor Immune Genes", "Version": "1.9.0", "Authors@R": "c(\nperson(\"Jonas\", \"Schuck\", email=\"jschuckdev@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0003-5705-4579\")),\nperson(\"Ahmad\", \"Al Ajami\", role = c(\"aut\"),\ncomment = c(ORCID = \"0009-0006-5615-7447\")),\nperson(\"Federico\", \"Marini\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-3252-7758\")),\nperson(\"Katharina\", \"Imkeller\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-5177-0852\")))", "Description": "Defines a S4 class that is based on SingleCellExperiment.\nIn addition to the usual gene layer the object can also store\ndata for immune genes such as HLAs, Igs and KIRs at allele and\nfunctional level. The package is part of a workflow named\nsingle-cell ImmunoGenomic Diversity (scIGD), that firstly\nincorporates allele-aware quantification data for immune genes.\nThis new data can then be used with the here implemented data\nstructure and functionalities for further data handling and\ndata analysis.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "biocViews": "DataRepresentation, Infrastructure, SingleCell,\nTranscriptomics, GeneExpression, Genetics, ImmunoOncology,\nDataImport", "URL": "https://github.com/AGImkeller/SingleCellAlleleExperiment", "BugReports": "https://github.com/AGImkeller/SingleCellAlleleExperiment/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:03:05 UTC", "RemoteUrl": "https://github.com/bioc/SingleCellAlleleExperiment", "RemoteRef": "HEAD", "RemoteSha": 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