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    "expandedAltDosage",
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    "hethom",
    "homozygosity",
    "hwe",
    "imputedDosage",
    "inbreedCoeff",
    "isSNV",
    "isVariant",
    "iterateFilter",
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    "lastFilter<-",
    "meanBySample",
    "mendelErr",
    "minorAlleleCount",
    "missingGenotypeRate",
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    "pca",
    "refChar",
    "refDosage",
    "refFrac",
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    "regression",
    "resetIterator",
    "sampleData",
    "sampleData<-",
    "SeqVarBlockIterator",
    "SeqVarData",
    "SeqVarIterator",
    "SeqVarListIterator",
    "SeqVarRangeIterator",
    "SeqVarWindowIterator",
    "setVariantID",
    "show",
    "titv",
    "validateSex",
    "variantBlock",
    "variantData",
    "variantData<-",
    "variantFilter",
    "variantInfo",
    "variantRanges"
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      "title": "Pedigree for example data",
      "object": "pedigree",
      "class": [
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      ],
      "fields": [
        "family",
        "individ",
        "father",
        "mother",
        "sex",
        "sample.id"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
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  ],
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    {
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      "title": "Tools for Variant Analysis",
      "topics": [
        "SeqVarTools-package",
        "SeqVarTools"
      ]
    },
    {
      "page": "allele-methods",
      "title": "Extract allele information from a GDS object",
      "topics": [
        "allele-methods",
        "altChar",
        "altChar,SeqVarGDSClass-method",
        "nAlleles",
        "nAlleles,SeqVarGDSClass-method",
        "refChar",
        "refChar,SeqVarGDSClass-method"
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    },
    {
      "page": "alleleFrequency",
      "title": "Allele frequency",
      "topics": [
        "alleleCount",
        "alleleCount,SeqVarData-method",
        "alleleCount,SeqVarGDSClass-method",
        "alleleFrequency",
        "alleleFrequency,SeqVarData-method",
        "alleleFrequency,SeqVarGDSClass-method",
        "minorAlleleCount",
        "minorAlleleCount,SeqVarData-method",
        "minorAlleleCount,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "alternateAlleleDetection",
      "title": "alternateAlleleDetection",
      "topics": [
        "alternateAlleleDetection",
        "alternateAlleleDetection,SeqVarData,SeqVarData-method"
      ]
    },
    {
      "page": "applyMethod",
      "title": "Apply method to GDS object",
      "topics": [
        "applyMethod",
        "applyMethod,SeqVarGDSClass,function,character-method",
        "applyMethod,SeqVarGDSClass,function,GRanges-method",
        "applyMethod,SeqVarGDSClass,function,missing-method",
        "applyMethod,SeqVarGDSClass,function,numeric-method"
      ]
    },
    {
      "page": "chromWithPAR",
      "title": "Identify pseudoautosomal region",
      "topics": [
        "chromWithPAR",
        "chromWithPAR,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "countSingletons",
      "title": "Count singletons",
      "topics": [
        "countSingletons",
        "countSingletons,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "duplicateDiscordance",
      "title": "Duplicate discordance",
      "topics": [
        "duplicateDiscordance",
        "duplicateDiscordance,SeqVarData,missing-method",
        "duplicateDiscordance,SeqVarData,SeqVarData-method",
        "duplicateDiscordance,SeqVarIterator,missing-method"
      ]
    },
    {
      "page": "getGenotype",
      "title": "Get genotype data",
      "topics": [
        "alleleDosage",
        "alleleDosage,SeqVarGDSClass,list-method",
        "alleleDosage,SeqVarGDSClass,numeric-method",
        "altDosage",
        "altDosage,SeqVarGDSClass-method",
        "expandedAltDosage",
        "expandedAltDosage,SeqVarGDSClass-method",
        "getGenotype",
        "getGenotype,SeqVarGDSClass-method",
        "getGenotypeAlleles",
        "getGenotypeAlleles,SeqVarGDSClass-method",
        "refDosage",
        "refDosage,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "getVariableLengthData",
      "title": "Get variable-length data",
      "topics": [
        "getVariableLengthData",
        "getVariableLengthData,SeqVarGDSClass,character-method"
      ]
    },
    {
      "page": "heterozygosity",
      "title": "Heterozygosity and Homozygosity",
      "topics": [
        "heterozygosity",
        "heterozygosity,SeqVarGDSClass-method",
        "hethom",
        "hethom,SeqVarGDSClass-method",
        "homozygosity",
        "homozygosity,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "hwe",
      "title": "Exact test for Hardy-Weinberg equilibrium",
      "topics": [
        "hwe",
        "hwe,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "imputedDosage",
      "title": "Get imputed dosage",
      "topics": [
        "imputedDosage",
        "imputedDosage,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "inbreedCoeff",
      "title": "Inbreeding coefficient",
      "topics": [
        "inbreedCoeff",
        "inbreedCoeff,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "isSNV",
      "title": "Flag single nucleotide variants",
      "topics": [
        "isSNV",
        "isSNV,SeqVarGDSClass-method"
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    },
    {
      "page": "isVariant",
      "title": "Locate variant samples across sites",
      "topics": [
        "isVariant",
        "isVariant,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "Iterator-class",
      "title": "Iterators",
      "topics": [
        "currentRanges",
        "currentRanges,SeqVarBlockIterator-method",
        "currentRanges,SeqVarListIterator-method",
        "currentRanges,SeqVarRangeIterator-method",
        "currentVariants",
        "currentVariants,SeqVarBlockIterator-method",
        "currentVariants,SeqVarIterator-method",
        "iterateFilter",
        "iterateFilter,SeqVarIterator-method",
        "lastFilter",
        "lastFilter,SeqVarIterator-method",
        "lastFilter<-",
        "lastFilter<-,SeqVarIterator,numeric-method",
        "resetIterator",
        "resetIterator,SeqVarIterator-method",
        "SeqVarBlockIterator",
        "SeqVarBlockIterator-class",
        "SeqVarIterator",
        "SeqVarIterator-class",
        "SeqVarListIterator",
        "SeqVarListIterator-class",
        "SeqVarRangeIterator",
        "SeqVarRangeIterator-class",
        "SeqVarWindowIterator",
        "SeqVarWindowIterator-class",
        "show,SeqVarIterator-method",
        "show,SeqVarListIterator-method",
        "show,SeqVarRangeIterator-method",
        "variantBlock",
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        "variantRanges",
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    },
    {
      "page": "meanBySample",
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      "topics": [
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        "meanBySample,SeqVarGDSClass-method"
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    },
    {
      "page": "mendelErr",
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      "topics": [
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        "mendelErr,SeqVarGDSClass-method"
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    },
    {
      "page": "missingGenotypeRate",
      "title": "Missing genotype rate",
      "topics": [
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        "missingGenotypeRate,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "pca",
      "title": "Principal Component Analysis",
      "topics": [
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        "pca,SeqVarGDSClass-method"
      ]
    },
    {
      "page": "pedigree",
      "title": "Pedigree for example data",
      "topics": [
        "pedigree"
      ]
    },
    {
      "page": "refFrac",
      "title": "Reference allele fraction",
      "topics": [
        "refFrac",
        "refFrac,SeqVarGDSClass-method",
        "refFracOverHets",
        "refFracOverHets,SeqVarGDSClass-method",
        "refFracPlot",
        "refFracPlot,SeqVarGDSClass-method"
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    },
    {
      "page": "regression",
      "title": "Linear or logistic regression",
      "topics": [
        "regression",
        "regression,SeqVarData-method"
      ]
    },
    {
      "page": "SeqVarData-class",
      "title": "SeqVarData",
      "topics": [
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        "sampleData,SeqVarData-method",
        "sampleData<-",
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      "page": "setVariantID",
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    },
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      "page": "titv",
      "title": "Transition/Transversion Ratio",
      "topics": [
        "titv",
        "titv,SeqVarGDSClass-method"
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    },
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      "page": "variantInfo",
      "title": "Variant info",
      "topics": [
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        "expandedVariantIndex,SeqVarGDSClass-method",
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