{ "_id": "6a129eaeacfb0bcc41d0ff35", "Package": "STADyUM", "Type": "Package", "Title": "Statistical Transcriptome Analysis under a Dynamic Unified Model", "Version": "1.3.0", "Authors@R": "c(\nperson(\"Yixin\", \"Zhao\",\nemail = \"\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7856-2818\")\n),\nperson(\"Lingjie\", \"Liu\",\nemail = \"\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-5765-1213\")\n),\nperson(\"Rebecca\", \"Hassett\",\nemail = \"hassett@cshl.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5133-9387\")\n)\n)", "Description": "STADyUM is a package with functionality for analyzing\nnascent RNA read counts to infer transcription rates. This\nincludes utilities for processing experimental nascent RNA read\ncounts as well as for simulating PRO-seq data. Rates such as\ninitiation, pause release and landing pad occupancy are\nestimated from either synthetic or experimental data. 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