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        "dimnames<-,BamViews,ANY-method",
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        "BamSampler-class",
        "scanBam,BamSampler-method",
        "show,BamSampler-method",
        "yieldTabix",
        "yieldTabix,TabixFile-method"
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    {
      "page": "FaFile-class",
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      "topics": [
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        "countFa,FaFile-method",
        "FaFile",
        "FaFile-class",
        "FaFileList",
        "FaFileList-class",
        "getSeq,FaFile-method",
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        "gzindex",
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        "gzindex,FaFileList-method",
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    },
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      "page": "scanFa",
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        "countFa,character-method",
        "indexFa",
        "indexFa,character-method",
        "scanFa",
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        "scanFa,character,missing-method",
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    },
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      "page": "headerTabix",
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    },
    {
      "page": "indexTabix",
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      "topics": [
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      ]
    },
    {
      "page": "pileup",
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        "distinguish_nucleotides",
        "distinguish_strands",
        "ignore_query_Ns",
        "include_deletions",
        "include_insertions",
        "left_bins",
        "max_depth",
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        "min_mapq",
        "min_minor_allele_depth",
        "min_nucleotide_depth",
        "phred2ASCIIOffset",
        "pileup",
        "pileup,BamFile-method",
        "pileup,character-method",
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    {
      "page": "PileupFiles-class",
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        "applyPileups,PileupFiles,missing-method",
        "isOpen,PileupFiles-method",
        "PileupFiles",
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      "page": "quickBamFlagSummary",
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      "page": "readPileup",
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      "page": "testPairedEndBam",
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        "Other ways to work with BAM files",
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